Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59750 40 / 0.0002 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT1G19850 39 / 0.0005 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G221300 [exp] 123 / 3e-37 AT4G01500 48 / 4e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.011G005200 [exp] 109 / 4e-32 AT4G01500 50 / 3e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G126301 [exp] 109 / 3e-31 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005300 [exp] 102 / 1e-29 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005601 [exp] 100 / 1e-28 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G011000 [exp] 100 / 3e-28 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G006050 [exp] 99 / 7e-28 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.007G119400 [exp] 96 / 7e-27 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G010850 [exp] 96 / 2e-26 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007440 [exp] 39 / 0.0003 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 39 / 0.0003 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G221600.2 pacid=42794959 polypeptide=Potri.004G221600.2.p locus=Potri.004G221600 ID=Potri.004G221600.2.v4.1 annot-version=v4.1 ATGGAAGTGCTGATCATGGAGAAGAAATTGAGCCAAACTGACATAGAATATCGTTTGGCATTTCCGACCTCTAGTCTGTGGGCTTTCCCAATGCCTGAAG GAGAAACTGCTGTGTACTTTGAAGCAACAGATACCCTTGAGAACGAGTGGAACTTTAGGCTTTCCATTCGTGGGGAAAATGATCGTTATACTAAACCTGT GATCACTGGGGACTGGCTTCAATTTGTGCGTGACAAAGGCCTTAAAGTGGGTGATAAACTCTTTCTGACGAGGGAAGAAGGAGTGAATGGAGTGAGATAC AGCATAAGAGCAGAAAGAAAGATTTTCAAGGTTTGGGCTAATGTGCAGTAA
AA sequence Show only first row Show all	>Potri.004G221600.2 pacid=42794959 polypeptide=Potri.004G221600.2.p locus=Potri.004G221600 ID=Potri.004G221600.2.v4.1 annot-version=v4.1 MEVLIMEKKLSQTDIEYRLAFPTSSLWAFPMPEGETAVYFEATDTLENEWNFRLSIRGENDRYTKPVITGDWLQFVRDKGLKVGDKLFLTREEGVNGVRY SIRAERKIFKVWANVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G221600 [exp]	0	1
					Potri.010G135600 [exp]	4.00	0.9975
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.002G056700 [exp]	6.92	0.9973
AT5G06740			Concanavalin A-like lectin pro...		Potri.016G045000 [exp]	7.07	0.9977
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223712 [exp]	9.89	0.9977
AT2G31335			unknown protein		Potri.010G075133 [exp]	10.14	0.9895
					Potri.006G260948 [exp]	12.24	0.9977
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.005G048400 [exp]	13.26	0.9965
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037000 [exp]	14.28	0.9976
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	15.32	0.9975
					Potri.006G261111 [exp]	27.65	0.9975

Compare expression of checked genes

Potri.004G221600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.