Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23170 274 / 5e-90 Protein kinase superfamily protein (.1) AT3G51990 233 / 5e-74 Protein kinase superfamily protein (.1) AT1G28390 224 / 5e-69 Protein kinase superfamily protein (.1.2) AT3G59420 204 / 5e-59 ACR4 crinkly4 (.1) AT5G38560 184 / 2e-52 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G58690 177 / 6e-52 Protein kinase superfamily protein (.1) AT5G47850 181 / 5e-51 CCR4 CRINKLY4 related 4 (.1) AT1G23540 180 / 9e-51 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT2G28930 174 / 1e-50 APK1B protein kinase 1B (.1.2.3) AT1G24030 172 / 1e-50 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G010300 [exp] 597 / 0 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 275 / 2e-88 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.009G055200 [exp] 264 / 2e-84 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.001G260800 [exp] 259 / 2e-83 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 201 / 8e-58 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.013G025700 [exp] 187 / 2e-55 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.007G128400 [exp] 194 / 3e-55 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 192 / 7e-55 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 187 / 5e-53 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019948 [exp] 259 / 3e-85 AT3G51990 174 / 3e-52 Protein kinase superfamily protein (.1) Lus10016371 [exp] 259 / 2e-82 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10015478 [exp] 246 / 3e-79 AT3G51990 169 / 2e-49 Protein kinase superfamily protein (.1) Lus10039770 [exp] 249 / 3e-78 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10015956 [exp] 202 / 7e-58 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 200 / 2e-57 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10029170 [exp] 187 / 4e-53 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10020688 [exp] 180 / 6e-53 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10032741 [exp] 183 / 1e-51 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 176 / 1e-51 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G221800.2 pacid=42793816 polypeptide=Potri.004G221800.2.p locus=Potri.004G221800 ID=Potri.004G221800.2.v4.1 annot-version=v4.1 ATGGTGGAGTTTGACTATAAGGAACTTGTAAAGGCAACTGGAAGCTTCTCTCCTTCAAGGCTCCTAGGAAAAGGAAGCCATGGATCAGTCTACAAGGGCA CACTTGAAGAAAACAAGCTTGTTGCGATCAAGAAATCGTCTGTTGGCAGTGACCATGTCTCTATTGACAACTCCAAGAAGCTTGAGAATGAAATATGTGT TTTATCCTCCCTAGGTGAAAGTCCTTATGTCATCAACTTTCTTGGAACGACTCGTGATGATGATCACTACTCCACTTGCAAGGAGAAGAACAGGCTTTTG GTTATGGAGTATATGCCTTACGGTTCTCTCCATGACTTGTTGCATGTTGATGCCACTCCACCATCATGGCCTAAACGAGTAGAAATTGCTATCCAAATCG CAAGGGCAATCCAATTCCTTCACGAGGGCAAGCCTTTGGTTATTCACAGAGACATTAAATCTGCTAATGTTTTGTTTGATTTAAATTGGAAGGCTAAGTT GGCGGATTTTGGACTTGCTGTGCTGCGCGTGGATTCATCATCAAGCCCTGATCAAGAGACTCAACCGGCTGGCACAATTGGGTACTTGGATCCTTGTTAC ACCACACCTAGCAAACTAAGCACCAAGAATGATGTTTTCAGCTATGGAGTTGTTTTGTTAGAGATCGTTAGCTGTCAAAAAGCGATCGATGTTTCTAGGC TGCCGGCTTCAATAGTTGATTGGGCAGTGCCATTGATTGAGAAGCAAAGATTGATGGAAGTATGTGACTCGAGAATCGCATTGCCAACATTCATGGAGGG CACGATTAAGCACTTGTTATATGTAGCATCGCGTTGTGTCTCATGCAAGGAAGAAAACCGTCCATCAATTAGTGAAATTGTTATGGGGATGGATAAGAAT TGCTTGGTTGGAAGAGTAAAAATCCCCAGTTGGACAAGTCTCATGAGGAGTGTGATGCTAATGAGAAGCCCCAGAAAGTTTCTTAAGCAATGGCAGGAGG AAAAATGTGATGATCTACACAGTAATATTTCAAAAGGGAAGGTATATTTATGGGAGATATTGGCTAATATCACACAAAACTGA
AA sequence Show only first row Show all	>Potri.004G221800.2 pacid=42793816 polypeptide=Potri.004G221800.2.p locus=Potri.004G221800 ID=Potri.004G221800.2.v4.1 annot-version=v4.1 MVEFDYKELVKATGSFSPSRLLGKGSHGSVYKGTLEENKLVAIKKSSVGSDHVSIDNSKKLENEICVLSSLGESPYVINFLGTTRDDDHYSTCKEKNRLL VMEYMPYGSLHDLLHVDATPPSWPKRVEIAIQIARAIQFLHEGKPLVIHRDIKSANVLFDLNWKAKLADFGLAVLRVDSSSSPDQETQPAGTIGYLDPCY TTPSKLSTKNDVFSYGVVLLEIVSCQKAIDVSRLPASIVDWAVPLIEKQRLMEVCDSRIALPTFMEGTIKHLLYVASRCVSCKEENRPSISEIVMGMDKN CLVGRVKIPSWTSLMRSVMLMRSPRKFLKQWQEEKCDDLHSNISKGKVYLWEILANITQN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	0	1
AT2G47115			unknown protein		Potri.014G115200 [exp]	2.00	0.8919
AT5G67390			unknown protein		Potri.007G053300 [exp]	2.44	0.8361
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	4.69	0.8476
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	5.29	0.8358	Pt-TAN1.2
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.008G142000 [exp]	6.16	0.7873
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	10.90	0.8082
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	15.32	0.8195
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	18.76	0.8035
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	20.85	0.8088	Pt-MYB.42,MYB181
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	21.74	0.8113

Compare expression of checked genes

Potri.004G221800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.