Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58100 172 / 6e-48 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G35560 138 / 3e-36 TCP TCP23 TCP family transcription factor (.1) AT1G72010 131 / 2e-33 TCP TCP22 TCP family transcription factor (.1) AT1G69690 118 / 3e-29 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT3G47620 120 / 7e-29 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT5G23280 112 / 1e-27 TCP TCP7 TCP family transcription factor (.1) AT5G08330 106 / 6e-26 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT2G45680 107 / 2e-25 TCP TCP9 TCP family transcription factor (.1) AT3G27010 104 / 1e-24 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT5G51910 102 / 5e-24 TCP TCP19 TCP family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081800 [exp] 192 / 5e-55 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.013G110700 [exp] 184 / 4e-52 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.005G090300 [exp] 118 / 1e-29 AT5G23280 169 / 9e-52 TCP family transcription factor (.1) Potri.011G055500 [exp] 120 / 2e-29 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 119 / 8e-29 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.007G074028 [exp] 115 / 9e-29 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.014G078500 [exp] 107 / 2e-25 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.015G138200 [exp] 107 / 3e-25 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2) Potri.017G068748 [exp] 104 / 2e-24 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037190 [exp] 137 / 7e-35 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10010177 [exp] 104 / 2e-24 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10037046 [exp] 99 / 2e-24 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 101 / 7e-24 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 102 / 2e-23 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008621 [exp] 97 / 3e-22 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008444 [exp] 85 / 8e-20 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2) Lus10041328 [exp] 87 / 3e-19 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10013814 [exp] 84 / 3e-18 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10015479 [exp] 80 / 3e-17 AT1G58100 66 / 3e-13 TCP domain protein 8, TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.004G222100.1 pacid=42794454 polypeptide=Potri.004G222100.1.p locus=Potri.004G222100 ID=Potri.004G222100.1.v4.1 annot-version=v4.1 ATGGAACTCTCAAATTCGCAAAGCAACAAAGAAAATAATACAACTCAAGAGCCCCACCAATCTCACCACCACCACCGTCAACACCTCCAACAACAACTAT CTTTTGATCATGGCAGATCATCATCATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACCATCTCAAGGTCCTTTCATGGGCTCCATCTCCATCCA AGCTGGCCTCCACCATCACCATAATCTCGGTGCATCGTCAACTCCAACCACAGCTAATACTGGGTCTGTACCTTCACCATCATCTTCACCTCTATCTTCT TCCTCCTCCTCCACCTCCGCATCCACCTCATCCACAACCCCACCACGCCTGGTCGACGCCTCTCTCGCCATCGCCACCAGTTATGACCCTTCTCTCGTAG ACTCCACGAAGAAGAAGCAACAAAATCTATCCATTGCTCCAGCTGCCACAAACAGTACTAGTGCAGCCACAACAGCAGCAGTAACACCCGCAAAGCGGTC CACAAAGGACCGACACACAAAAGTAGATGGTCGAGGGAGGAGAATTAGAATGCCAGCAACGTGTGCAGCAAGGGTTTTTCAATTGACAAGAGAACTGGGT CACAAATCTGATGGAGAAACAATTGAGTGGTTGTTACAGCAAGCAGAATCAACAATTATAGCAGCCACTGGGACTGGTACTATTCCAGCAAATTTCTCAA CGCTCAATGTTTCTTTAAGGAGCAGTGGCTCCACTCTCTCAGCTCCTCCGTCTAAATCTGCTCCTCATTCTTTCCATAGCGCTCTTGGTTTGTCTCATCA TCCTCATTATGAAGAAGGGTTTGCGCACCCAGCCTTTTTAGGGTTCCAGCAGCAGCATCAGCAGCAGCATCATCTAATGACAGCAGATCAAATAGCGCAA GCACTGCCAATTGGTGCTGATGGCGGTGGCGGTGGCGGTGAGAGTCGTGGTGGTGGAGAAGAGAATTATATGAGGAAACGCTTTAGAGAAGATTTATTCA AGGAGGATAATCCACAAGAACAAGGAGAAAGTGGTGGTGGTCGCGGTGGTGGTGGTGATGGAGGAGAAGAGCCTCCCATTAAAGCATTTAAAAGTGATTT ACAGCTGCCAAAACCACAGCAACAAGAGACAGGATCTTCAGGGTTGCTTAGGCCATCAAATATCTTGCCTACCACTGCCATGTGGGCAATGGCACCAGCT CCGCCGAGCAGTGGTGCTGGCAACACATTTTGGATGCTACCAATGACTGCTGGTGCCGGTGGCGGTCCTCCTTTGGCCACATCTGTGGCTTGTCCTAGTT CAGAACCCCAGATTTGGCCTTTCGCTACAGCAACACCAGCAAGTGGAAACCCATTGCAAGCTCCACTACATTTCGTGCCAAGATTTAATCTCCCCACTAC TAGTCTTGAATTTCAACGTGGAAGAGGGAGTCCTCTACAGTTGGGATCTATGAGTCCTTTACAGTTGGGGTCTATGTTAATGCAGCAGCAGCACCAACAA CAGCAACAGCAACAGCAACAGCAACATCAACAGCAACAACCTTCTCAGTATCTGGGGTTAGGCATGCCAGAGTCTAATTTGGGAATGTTGGCTGCTCTCA ATGCATATTCAAGAGGTGATTTGAACATGAATTCCCAGCAAAATAATCCATTGGATCACCACCACCAACACCACCACCAACACCACCACCACCAGACTCA GGGTACTCCTGATAGTGGAGATGAAGATCCGAATACTTCTCAGTGA
AA sequence Show only first row Show all	>Potri.004G222100.1 pacid=42794454 polypeptide=Potri.004G222100.1.p locus=Potri.004G222100 ID=Potri.004G222100.1.v4.1 annot-version=v4.1 MELSNSQSNKENNTTQEPHQSHHHHRQHLQQQLSFDHGRSSSSGGGGGGGGGGGPSQGPFMGSISIQAGLHHHHNLGASSTPTTANTGSVPSPSSSPLSS SSSSTSASTSSTTPPRLVDASLAIATSYDPSLVDSTKKKQQNLSIAPAATNSTSAATTAAVTPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELG HKSDGETIEWLLQQAESTIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHSALGLSHHPHYEEGFAHPAFLGFQQQHQQQHHLMTADQIAQ ALPIGADGGGGGGESRGGGEENYMRKRFREDLFKEDNPQEQGESGGGRGGGGDGGEEPPIKAFKSDLQLPKPQQQETGSSGLLRPSNILPTTAMWAMAPA PPSSGAGNTFWMLPMTAGAGGGPPLATSVACPSSEPQIWPFATATPASGNPLQAPLHFVPRFNLPTTSLEFQRGRGSPLQLGSMSPLQLGSMLMQQQHQQ QQQQQQQQHQQQQPSQYLGLGMPESNLGMLAALNAYSRGDLNMNSQQNNPLDHHHQHHHQHHHHQTQGTPDSGDEDPNTSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Potri.004G222100 [exp]	0	1
AT1G20990			Cysteine/Histidine-rich C1 dom...		Potri.005G258800 [exp]	4.47	0.9307
AT5G43120			ARM-repeat/Tetratricopeptide r...		Potri.007G052300 [exp]	6.00	0.9328
AT2G48090			unknown protein		Potri.014G137850 [exp]	6.78	0.9378
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.017G116300 [exp]	8.00	0.9018
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	10.95	0.9316
AT1G14900		HMGA	high mobility group A (.1)		Potri.008G132400 [exp]	13.37	0.8442	HMGA903
AT3G52710			unknown protein		Potri.006G212800 [exp]	15.49	0.9249
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	15.87	0.9254
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.002G174300 [exp]	16.52	0.9115
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.009G098800 [exp]	18.33	0.8659

Compare expression of checked genes

Potri.004G222100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.