Plant FIBer expression Database

Potri.004G222200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41200 66 / 4e-12 MADS AGL75 AGAMOUS-like 75 (.1)
AT5G65330 63 / 2e-11 MADS AGL78 AGAMOUS-like 78 (.1)
AT3G18650 62 / 8e-11 MADS AGL103 AGAMOUS-like 103 (.1)
AT4G11250 61 / 2e-10 MADS AGL52 AGAMOUS-like 52 (.1)
AT5G40220 60 / 3e-10 MADS AGL43 AGAMOUS-like 43 (.1)
AT5G40120 59 / 7e-10 MADS AGL76 AGAMOUS-like 76 (.1)
AT4G02235 57 / 7e-10 MADS AGL51 AGAMOUS-like 51 (.1)
AT5G38740 58 / 1e-09 MADS AGL77 AGAMOUS-like 77 (.1)
AT5G39750 58 / 2e-09 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1)
AT5G39810 56 / 4e-09 MADS AGL98 AGAMOUS-like 98 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G077800
[exp]
116 / 1e-31 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1)
Potri.010G238900
[exp]
69 / 9e-14 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1)
Potri.008G020300
[exp]
62 / 2e-11 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1)
Potri.001G214900
[exp]
63 / 3e-11 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1)
Potri.001G329800
[exp]
58 / 1e-09 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
Potri.002G255700
[exp]
56 / 6e-09 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1)
Potri.012G109900
[exp]
56 / 9e-09 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1)
Potri.007G087500
[exp]
45 / 3e-05 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1)
Potri.010G181300
[exp]
44 / 3e-05 AT3G18650 49 / 7e-07 AGAMOUS-like 103 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001273
[exp]
57 / 5e-09 AT3G15850 142 / 1e-38 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Lus10022594
[exp]
52 / 4e-08 AT3G18650 61 / 2e-11 AGAMOUS-like 103 (.1)
Lus10024347
[exp]
52 / 5e-08 AT3G18650 63 / 8e-12 AGAMOUS-like 103 (.1)
Lus10014095
[exp]
52 / 2e-07 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1)
Lus10021494
[exp]
50 / 2e-07 AT3G18650 65 / 8e-13 AGAMOUS-like 103 (.1)
Lus10019819
[exp]
51 / 4e-07 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1)
Lus10012656
[exp]
45 / 1e-06 AT3G18650 59 / 9e-12 AGAMOUS-like 103 (.1)
Lus10016563
[exp]
47 / 2e-06 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1)
Lus10016810
[exp]
47 / 6e-06 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1)
Lus10022506
[exp]
47 / 6e-06 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00319 SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence
>Potri.004G222200.1 pacid=42794584 polypeptide=Potri.004G222200.1.p locus=Potri.004G222200 ID=Potri.004G222200.1.v4.1 annot-version=v4.1
ATGGCAGAGATTGGAACAACTAGAATGCCGAATCACCAGAGGAAGAAGATCCTGAATAGAGACCAAGCAAGCCATGCTATGAGCTTCTCCAAGCGAACGA
AAACCTTGAAGAAGAAAGCTCACGAGCTTCAGACACTGTGTGATGTCAAGATTTGCATGGTCTGTTTTGGTCCTGACAGCACCGTCCAGACATGGCCAGA
GGGTGCTGTGGAGGTCAAGGATGCAATCATGTCCTACAAAGGACTCGGTGATAGAAAAAAATACGAGAGCAGCCTCTTGGGTTATTTGCATGATAAAAAG
ATGAAGCTTGAAGTCAAGAAACGGAAGGTGATGAAGAAGAAGGTTAATAAAGAGCTCATTGTCAAGTGGTCCGATCATGTTGATGGGTTATCTGATGATG
CTTTGAGGGACACAGTTAACACTTTAGAGTCTAGATTGTTTGATTTGAAAGAGAAAATAAAGTTATGCATGCAGAGGGATAAGGTAGAGGCAATTCAAGA
TCATGTTGATATGGAATTTGAGATGGATGGATCATCCGTTCCTAGCAGTGCTGCTGGTGCAACTGCCTGGCCAGCAGACGTCATGGATACAAACATCAAC
GTTGTGGAAACTGTTGGTAATAATGACAAGGATGCAGCTTCCACCAGCTTTGAGATGCCACCACTACCAAAAGATTCAAGTGACTGGATGGAGAGTTTAC
GTAACTGGATGGAGAATGATGAAGCCTATCAGCATGGTTTTGAAAATGATGATTGGTTTAATGAGTGGGAAGCATGA
AA sequence
>Potri.004G222200.1 pacid=42794584 polypeptide=Potri.004G222200.1.p locus=Potri.004G222200 ID=Potri.004G222200.1.v4.1 annot-version=v4.1
MAEIGTTRMPNHQRKKILNRDQASHAMSFSKRTKTLKKKAHELQTLCDVKICMVCFGPDSTVQTWPEGAVEVKDAIMSYKGLGDRKKYESSLLGYLHDKK
MKLEVKKRKVMKKKVNKELIVKWSDHVDGLSDDALRDTVNTLESRLFDLKEKIKLCMQRDKVEAIQDHVDMEFEMDGSSVPSSAAGATAWPADVMDTNIN
VVETVGNNDKDAASTSFEMPPLPKDSSDWMESLRNWMENDEAYQHGFENDDWFNEWEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41200 MADS AGL75 AGAMOUS-like 75 (.1) Potri.004G222200
[exp]
0 1

Potri.004G222200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.