Plant FIBer expression Database

Potri.004G222400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09795 552 / 0 HISN1B, ATATP-PRT2 ATP phosphoribosyl transferase 2 (.1)
AT1G58080 546 / 0 HISN1A, ATATP-PRT1 ATP phosphoribosyl transferase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G057200
[exp]
612 / 0 AT1G09795 565 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003685
[exp]
551 / 0 AT1G09795 580 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Lus10028993
[exp]
530 / 0 AT1G09795 558 / 0.0 ATP phosphoribosyl transferase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0177 PBP PF01634 HisG ATP phosphoribosyltransferase
CL0089 GlnB-like PF08029 HisG_C HisG, C-terminal domain
Representative CDS sequence
>Potri.004G222400.1 pacid=42794184 polypeptide=Potri.004G222400.1.p locus=Potri.004G222400 ID=Potri.004G222400.1.v4.1 annot-version=v4.1
ATGTCTCTGCGACTTCACTTGCCAAACTTCCAACAATGCTCCTCTCCTCTCTCTTCCTCCTTTTCTCTCCCTCCATGTTTTCATGTCCCTTGCTCTCAAA
GACGATGGCCACATGCCACTTGGAGCAGCAGCATTGCTTGCCACTTGCCCCAGCAGCAGCAATCTGTTGCTGTTATTGAGAAAAATGAGACTAGTACTAG
TGTACTGTCTGAAAGAAAAGTGATTCGTTTCGGTTTGCCTAGCAAAGGACGCATGGCTGCCGATACTCTCGATCTCCTCAAGGATTGTCAGTTGTTGGTG
AAGCAAGTCAACCCTCGACAATACGTTGCAGAAATTCCTCAGCTTTCCAACTTGGAAGTGTGGTTTCAACGACCCAAAGACATTGTAAGAAAGTTGTTGT
CAGGAGATCTGGACCTTGGAATTGTGGGTTTTGATACTTTCAGTGAATATGGACTGGGAAATGAAGATCTTATCATTGTTCATGATGCTCTTGGATACGG
GGACTGCCGTTTATCCCTTGCAATTCCTAATCATGGGATATTTGAAAGTATAAATTCACTGAGGGAGCTATCACAAATGCCTCAATGGACAGCTTCGAAA
CCTCTACGAATAGCTACTGGCTTCACTCACCTTGGTCCTAAATTTATGAAGGATAATGGGATCGTGAATGTGACATTTTCAACTGCTGATGGAGCACTGG
AAGCTGCTCCTGCGATGGGGATAGCTGATGCTATTTTGGACCTTGTGAGCAGTGGAACAACACTGAAAGAAAACAACTTGAAAGAAATTGAAGGTGGAGT
TTTGTTGGAGAGCCAGGCCGTTCTTGTTGCTAGGAGAAAATCATTGGTTGAACAAAAGGACGTGAGGTGCAGAACAAAAGAGATTCTAGAAAGGTTTGAG
GCTCATTTGAGGGCGGTTGATCAGTTCACGGTGACTGCGCACATGAGAGGAAGTAGTGCAGAGGAAGTGGCTGGACGAGTGTGCAGCCAACCATCTTTGT
CCGGATTGGAGGGACCTACTATAAGTCCAGTTTTCTGCAAACATAATGGAAAGGTTACCCCTGATTACTATGCTATAGTGATATGTGTTCCAAAGAAAGC
ATTATACAAGTCTGTGCAGCAGCTGAGAGAGATTGGAGGCAGCGGTGTTTTAGTTTCTCCTTTAACTTACATTTTTGAGGAAGTCACGCCAAGATGGAAG
GAGCTTCTTTTAAAACTGGGGTTGTAA
AA sequence
>Potri.004G222400.1 pacid=42794184 polypeptide=Potri.004G222400.1.p locus=Potri.004G222400 ID=Potri.004G222400.1.v4.1 annot-version=v4.1
MSLRLHLPNFQQCSSPLSSSFSLPPCFHVPCSQRRWPHATWSSSIACHLPQQQQSVAVIEKNETSTSVLSERKVIRFGLPSKGRMAADTLDLLKDCQLLV
KQVNPRQYVAEIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGFDTFSEYGLGNEDLIIVHDALGYGDCRLSLAIPNHGIFESINSLRELSQMPQWTASK
PLRIATGFTHLGPKFMKDNGIVNVTFSTADGALEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGVLLESQAVLVARRKSLVEQKDVRCRTKEILERFE
AHLRAVDQFTVTAHMRGSSAEEVAGRVCSQPSLSGLEGPTISPVFCKHNGKVTPDYYAIVICVPKKALYKSVQQLREIGGSGVLVSPLTYIFEEVTPRWK
ELLLKLGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Potri.004G222400
[exp]
0 1
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Potri.014G012800
[exp]
4.79 0.8510
AT1G67590 Remorin family protein (.1.2) Potri.010G056800
[exp]
7.07 0.8292
AT4G32890 GATA GATA9 GATA transcription factor 9 (.... Potri.001G188500
[exp]
9.38 0.8194
AT5G19875 unknown protein Potri.001G009300
[exp]
10.39 0.8296
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Potri.001G082600
[exp]
12.08 0.8315
AT3G03680 C2 calcium/lipid-binding plant... Potri.013G066400
[exp]
14.28 0.8019
AT5G65360 Histone superfamily protein (.... Potri.003G210100
[exp]
20.39 0.8021 HTR902
AT4G03500 Ankyrin repeat family protein ... Potri.019G108000
[exp]
20.83 0.8226
AT1G01110 IQD18 IQ-domain 18 (.1.2) Potri.012G022500
[exp]
22.71 0.8294
AT1G73325 Kunitz family trypsin and prot... Potri.019G088200
[exp]
24.65 0.8005

Potri.004G222400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.