Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40360 959 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G01770 51 / 3e-06 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G53500 47 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G08850 47 / 6e-05 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT4G32990 46 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 46 / 7e-05 TAF5 TBP-associated factor 5 (.1) AT5G42010 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 45 / 0.0001 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 45 / 0.0002 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64610 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009600 [exp] 1218 / 0 AT2G40360 914 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G106600 [exp] 52 / 9e-07 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.002G051900 [exp] 46 / 4e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G059500 [exp] 46 / 5e-05 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 46 / 8e-05 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 45 / 9e-05 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G132000 [exp] 46 / 0.0001 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G052800 [exp] 45 / 0.0001 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 45 / 0.0002 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023107 [exp] 971 / 0 AT2G40360 937 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011471 [exp] 969 / 0 AT2G40360 932 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 49 / 6e-06 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017312 [exp] 48 / 3e-05 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006916 [exp] 47 / 4e-05 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 47 / 5e-05 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 46 / 8e-05 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 46 / 0.0001 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039597 [exp] 45 / 0.0001 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 45 / 0.0001 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF08145 [poplar] [flax] BOP1NT BOP1NT (NUC169) domain
Representative CDS sequence Show only first row Show all	>Potri.004G222500.3 pacid=42794597 polypeptide=Potri.004G222500.3.p locus=Potri.004G222500 ID=Potri.004G222500.3.v4.1 annot-version=v4.1 ATGGTGAATCCTCTGGAGATGAGGTACATGGGCATTCACAACACTGGCAGTAGTGAGGGCTTGGCCATTGATGGTCAGAGTGAAGACTCTGAACCTGATC TAGGAGCTGAAGAAAGTGATTCTTCTGAGGATGAGGTGGCTCCTAGAAATACGGTTGGTGATGTTCCCTTGGAGTGGTATAGGGATGAAAAACATATTGG GTATGACATTGCTGGAAAGAAGATAAAAAAGAAAGAAAGACAAGATAAACTCGATTCATTTCTGGCAAATGTTGACGACTCAAAAAATTGGCGCAAGATT TATGATGAGTACAATGATGAGGAAGTAGAGCTTACAAAAGATGAAACCAAACTTGTTCGTAGAATGCTCAAAGGAAAAGCTCCACATGCTGACTTTGATC CATATGTGCCTTATGTTGATTGGTTTAAATGGGAAGATGCAAAGCATCCATTGTCAAATGCACCAGAGCCAAAGAGTCGATTCATCCCCTCAAAATGGGA AGCTAAAAAGGTTCTTGGACTTGTCAGGGCAATTCGCAAAGGATATATAAAGTTTGACAAGCCTAAAGAAGAGCCCCGTTTCTACATGTTGTGGGGGGAC GATGCTAGCTCATCAGAAAAGACTGGGCACTTGTCTTACATTCCTGCACCAAAACCAAATTTGCCAGGTCATGAGGAGTCATACAATCCTTCTCTAGAGT ACATCCCAACACAAGAGGAGATCAATTCTTATCAGTTGATGGATGAGGAAGACCGTCCTAAATTTATCCCTAAAAGGTTTACATCTTTGAGGAGCATCCC AGCTTATGAGAATGCTGTTAAAGACTCTTTTGAGCGTTGCTTGGATTTATACTTGTGTCCTAGAGTTCGCAAGAAACGTATTAATATTGATCCTGAATCT TTAAAGCCTAAGCTGCCAAGCCGAAAAGATCTTAGACCTTACCCAGCGACATGCTATCTTGAGTATAGAGGACACAAGGGTGCAGTTATGTCCATTTCCA CTGAAGCTTCAGGACAGTGGATTGCTTCAGGTTCTAGTGATGGAACTGTGCGTTTGTGGGAGGTTGAGACTTGTAGATGTATTAAAGTCTGGGAGTTTGG TGAAATTGTCCAATATGTAGCATGGAATCCTTTGCCGGAGCTTCCTATCTTGGCTGTCACTGTGGGACAAGATGTATTTCTTTTGAACAGTGGGTTGGGA AATGAAGAAATACAGAGAAAAGTTAAGGAGCTTCTGCAAGTTGAGACACCTAAAGCTCCAGAAGATTCTGGCAACAAGGTGTCTGGCTGGAGCTGGCTTC AAGATGATGAACATGAAGGAATCAGGTTAAGGCATTTCAAGGCTGTATTTTCAGTTGAATGGCATCGTAAAGGAGACTATTTCTCAACTGTGATGCCAGC TGGCGATTCAAAAGCAATTCTTATCCACCAGCTCTCTAAGAAATTTACACAAAGACATCCATTTAAGCTGCATGGACTTCCGGTGTCAGCAGTTTTTCAT CCTACTCGCTCCATCTTCTTTGTTTCAACAAAGAAGAATGTCCGTGTTTATGATCTGGTGAAGCAAAAGCTGATTAAGAAGCTGGAGACTGGATTACGTG AAGTCTCCTCTATTTCAATTCATCCTGCTGGTGATAACGTAATTGTGGGAAGCAGAGAGGGCAAATTATGTTGGTTTGACATGGACCTTTCATCTAAACC TTACAAAGTTCTCAAGTGTCATCCCAAAGACATAACCAATGTGGCCTTCCACCGTTCATACCCTTTATTTGCATCATGCTCTGATGATTGCACTGCATAT GTTTTTCATGGGACAGTTTATTCAGATCTTAATCAGAATCCTCTTATTGTTCCTCTGGAAATTCTCCGTGGGCATGCAAGTTCAAATGGAAGAGGAGTAT TGGACTGCAAGTTCCACCCACGGCAACCTTGGTTATTCACTGCTGGTGCTGATTCTTTGATAAAACTTTATTGTCACTAG
AA sequence Show only first row Show all	>Potri.004G222500.3 pacid=42794597 polypeptide=Potri.004G222500.3.p locus=Potri.004G222500 ID=Potri.004G222500.3.v4.1 annot-version=v4.1 MVNPLEMRYMGIHNTGSSEGLAIDGQSEDSEPDLGAEESDSSEDEVAPRNTVGDVPLEWYRDEKHIGYDIAGKKIKKKERQDKLDSFLANVDDSKNWRKI YDEYNDEEVELTKDETKLVRRMLKGKAPHADFDPYVPYVDWFKWEDAKHPLSNAPEPKSRFIPSKWEAKKVLGLVRAIRKGYIKFDKPKEEPRFYMLWGD DASSSEKTGHLSYIPAPKPNLPGHEESYNPSLEYIPTQEEINSYQLMDEEDRPKFIPKRFTSLRSIPAYENAVKDSFERCLDLYLCPRVRKKRINIDPES LKPKLPSRKDLRPYPATCYLEYRGHKGAVMSISTEASGQWIASGSSDGTVRLWEVETCRCIKVWEFGEIVQYVAWNPLPELPILAVTVGQDVFLLNSGLG NEEIQRKVKELLQVETPKAPEDSGNKVSGWSWLQDDEHEGIRLRHFKAVFSVEWHRKGDYFSTVMPAGDSKAILIHQLSKKFTQRHPFKLHGLPVSAVFH PTRSIFFVSTKKNVRVYDLVKQKLIKKLETGLREVSSISIHPAGDNVIVGSREGKLCWFDMDLSSKPYKVLKCHPKDITNVAFHRSYPLFASCSDDCTAY VFHGTVYSDLNQNPLIVPLEILRGHASSNGRGVLDCKFHPRQPWLFTAGADSLIKLYCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	4.00	0.8609
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	4.00	0.8796
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.002G182600 [exp]	6.16	0.8125
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	7.34	0.8293
AT2G18900			Transducin/WD40 repeat-like su...		Potri.018G091100 [exp]	7.34	0.8341
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	8.12	0.8499
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	8.77	0.8279
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	9.79	0.8035
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	10.72	0.8416
AT1G56110		NOP56	homolog of nucleolar protein N...		Potri.012G095400 [exp]	11.31	0.8190	NOP56.2

Compare expression of checked genes

Potri.004G222500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.