Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49940 293 / 3e-101 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 216 / 1e-70 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 103 / 5e-27 ATCNFU1, NFU1 NFU domain protein 1 (.1) AT3G20970 56 / 5e-09 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT1G51390 55 / 7e-09 ATNFU1, NFU5 NFU domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009300 [exp] 396 / 8e-142 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.006G165600 [exp] 221 / 7e-73 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.002G192200 [exp] 112 / 2e-30 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 104 / 2e-27 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1) Potri.010G237400 [exp] 61 / 7e-11 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015481 [exp] 323 / 9e-113 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001439 [exp] 215 / 3e-70 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001634 [exp] 215 / 3e-69 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1) Lus10009999 [exp] 113 / 1e-30 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1) Lus10043440 [exp] 54 / 3e-08 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10034140 [exp] 52 / 6e-08 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [poplar] [flax] NifU PF01106 [poplar] [flax] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G222600.2 pacid=42794811 polypeptide=Potri.004G222600.2.p locus=Potri.004G222600 ID=Potri.004G222600.2.v4.1 annot-version=v4.1 ATGCAATCGGTGGTTTGGAACCCAACTCACTGTAGCGCCCAACAAACCCTAGACACCTCCTGCAGCTCTCCTCTTCCTCTTCTTCATCATAAGAGTTGTA AAGGCTTTTTTGGTGCCCATGTGAGGAGCGCCAATCAGCTGCGGCGAGGCACCCCTTGCCATTCCTTACGGGCTCGACTGCCTTCTTTCACACAGAGGAG GCTAGTTGTAAAGGCTGTTGCTACTCCAGATTCGGCGGTAGAATTGCCGTTAACCGCGGATAATGTTGAGAGTGTATTGGATGAGGTTAGACCCTATCTG ATTTCAGATGGTGGTAATGTGGCATTACATGAGATTGATGGGAATGTTGTACGGTTAAAACTACAAGGAGCGTGCAGTTCTTGTTCTGCTTCTGTTACGA CAATGAAGATGGGTATTGAGCGTCGTTTAATGGAAAAGATTCCTGAGATAGTTGCAGTAGAAGCTATATCGGATGAAGAAACCGGACTTGAGTTGAAGGA AGAAAATATAGAGAAGGTGCTGGAAGAAATAAGGCCATACCTTGTTGGGGCAGCTGGAGGATCTCTTGAACTAGTGGCAATTGAGGAGCCAATAGTTAAA ATCCGAATAACAGGACCAGCAGCTGGGGTCATGACCGTAAGAGTGGCTGTTACCCAGAAATTACGAGAGAAAATTCCAGCCATTGCTGCAGTTCAACTCC TATGA
AA sequence Show only first row Show all	>Potri.004G222600.2 pacid=42794811 polypeptide=Potri.004G222600.2.p locus=Potri.004G222600 ID=Potri.004G222600.2.v4.1 annot-version=v4.1 MQSVVWNPTHCSAQQTLDTSCSSPLPLLHHKSCKGFFGAHVRSANQLRRGTPCHSLRARLPSFTQRRLVVKAVATPDSAVELPLTADNVESVLDEVRPYL ISDGGNVALHEIDGNVVRLKLQGACSSCSASVTTMKMGIERRLMEKIPEIVAVEAISDEETGLELKEENIEKVLEEIRPYLVGAAGGSLELVAIEEPIVK IRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.004G222600 [exp]	0	1
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	5.09	0.9601	Pt-LAF6.1
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	6.48	0.9533	OHP2.1
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	8.12	0.9593
AT2G04360			unknown protein		Potri.014G169200 [exp]	12.96	0.9551
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	15.55	0.9510	Pt-CHRC.3
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	17.02	0.9511
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	18.65	0.9541
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	21.16	0.9491
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Potri.010G082300 [exp]	21.93	0.9501	ATCLH1.2
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	21.97	0.9475

Compare expression of checked genes

Potri.004G222600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.