Plant FIBer expression Database

Potri.004G222800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58070 60 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G009400
[exp]
224 / 1e-73 AT1G58070 48 / 1e-06 unknown protein
Potri.019G021000
[exp]
190 / 1e-60 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015482
[exp]
63 / 1e-11 AT1G58070 108 / 6e-28 unknown protein
Lus10019953
[exp]
53 / 4e-08 AT1G58070 99 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G222800.1 pacid=42796412 polypeptide=Potri.004G222800.1.p locus=Potri.004G222800 ID=Potri.004G222800.1.v4.1 annot-version=v4.1
ATGGAAACACCAATGACTCCTTCTCCAAAACCAGCGAAAAACTACAGCTCCTCGGTTGACTCTTCTCGCCCATTTCGATCCGTCAGAGAAGCTGTTGCCA
TCTTCGGCGAGCGATTTCTCGTAGGAGAAATATACTCTCCAAAGCCTTATTATACTCCTCTAAGAGAAGAAACTAATGCATGGAGGTTCTTATCACCAAG
CCCCAGTTACAAAAGCCCCGAAGAAGATCATCATGAAGTACAAAATGATCAGATCTTTGGTACTCTTAAGAAACTCGAGGCTGAACTTGAGGAAACAAAG
GCAGAACTGAAGTTGCTAAAGGAGAGAGAGTCCGAGACCGAAATTGCACTGGCTTCATTGAATGCTGAGCTCCACATGAATTTGTCTAAGTTGGCTGAGG
CAGAGGCAGCTGCGGCTAAAAAGGCGGCAGAGTCGACAATAGCGGTGAGTTTTGAGAGGAAAAAGATGGAAGATCTTCTCAAGGAGGAAGAAAGGAGGAG
AGAGTTGACGGTAAGAATGGAGAATTTTCCAACCTTGGCTCAGATATTGAATCTTGGGGGAGAGCAAGGGTCCTTCCGAGGGAAGAAGGAGAGGAACGTA
ATGAAAAAAAAGCCTATTGTTCCTCTTGTGGGAGATTTGTTTTTCAAGAAAAAAGGTTCTTCTAATACTCTTAACAACCCTCTATATGCATCCCCTGAAA
TGTATTTTAATTGA
AA sequence
>Potri.004G222800.1 pacid=42796412 polypeptide=Potri.004G222800.1.p locus=Potri.004G222800 ID=Potri.004G222800.1.v4.1 annot-version=v4.1
METPMTPSPKPAKNYSSSVDSSRPFRSVREAVAIFGERFLVGEIYSPKPYYTPLREETNAWRFLSPSPSYKSPEEDHHEVQNDQIFGTLKKLEAELEETK
AELKLLKERESETEIALASLNAELHMNLSKLAEAEAAAAKKAAESTIAVSFERKKMEDLLKEEERRRELTVRMENFPTLAQILNLGGEQGSFRGKKERNV
MKKKPIVPLVGDLFFKKKGSSNTLNNPLYASPEMYFN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G58070 unknown protein Potri.004G222800
[exp]
0 1
AT5G40020 Pathogenesis-related thaumatin... Potri.017G075500
[exp]
1.00 0.9257
AT1G79450 ALIS5 ALA-interacting subunit 5 (.1.... Potri.001G381500
[exp]
1.41 0.8896
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Potri.011G106200
[exp]
4.24 0.8343
AT5G61750 RmlC-like cupins superfamily p... Potri.015G109600
[exp]
4.24 0.8830
AT3G09980 Family of unknown function (DU... Potri.010G235600
[exp]
4.58 0.8290
AT3G49070 Protein of unknown function (D... Potri.015G147400
[exp]
5.65 0.8647
AT2G33640 DHHC-type zinc finger family p... Potri.002G006900
[exp]
5.74 0.8182
AT1G20850 XCP2 xylem cysteine peptidase 2 (.1... Potri.005G256000
[exp]
7.74 0.8609 XCP2.1
AT4G26060 Ribosomal protein L18ae family... Potri.018G050900
[exp]
10.19 0.8236
AT5G18460 Protein of Unknown Function (D... Potri.013G050100
[exp]
10.81 0.8050

Potri.004G222800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.