Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58060 1758 / 0 RNA helicase family protein (.1) AT1G58050 1537 / 0 RNA helicase family protein (.1) AT2G35920 600 / 0 RNA helicase family protein (.1) AT1G48650 541 / 1e-169 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 531 / 2e-166 DEA(D/H)-box RNA helicase family protein (.1) AT2G01130 530 / 2e-166 DEA(D/H)-box RNA helicase family protein (.1) AT4G18465 246 / 6e-69 RNA helicase family protein (.1) AT2G30800 244 / 2e-65 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G26370 230 / 4e-63 RID1 RNA helicase family protein (.1) AT1G06670 228 / 4e-60 NIH nuclear DEIH-boxhelicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068900 [exp] 600 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 560 / 4e-177 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 551 / 1e-173 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G117800 [exp] 545 / 5e-171 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 516 / 2e-160 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.004G052700 [exp] 268 / 3e-76 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 272 / 1e-74 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.008G096800 [exp] 245 / 5e-68 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 168 / 8e-42 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001290 [exp] 670 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10009022 [exp] 562 / 1e-179 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10013479 [exp] 557 / 6e-176 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 553 / 2e-174 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 525 / 6e-164 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 524 / 8e-164 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10020816 [exp] 497 / 5e-160 AT1G58060 480 / 3e-154 RNA helicase family protein (.1) Lus10009012 [exp] 514 / 3e-159 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 504 / 1e-156 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009660 [exp] 390 / 1e-117 AT2G35920 969 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.004G222900.1 pacid=42794264 polypeptide=Potri.004G222900.1.p locus=Potri.004G222900 ID=Potri.004G222900.1.v4.1 annot-version=v4.1 ATGGCTCCCAAGAAGCCACAGAGAAGCAGCAGCAACAACAAAGCATCCTCTTCGAAATCAAATTCATCTTCTAATTCCGGTCCAAGGCTCCAGATTTCAG CCGAGAACGAGAACCGCCTACGCCGTCTCCTACTCAACTCCACAACCACCCCGCCTCTACAAACCACCGTTACTGATAACACTAACTCTCTCTCTAAAGC TCAAAAAGCTAAAAAGCTTAAGAATATTTACGAGAAACTCTCCTGTGAAGGCTTCTCTAATGATCATATTGAACTCGCTCTTTCTTCTCTCAAGGATAAT GCGACATTTGAGACCGCGCTTGATTGGTTATGCTTGAATTTGGCTGGAAATGAGCTTCCTTTGAAGTTTTCTGGCGGAACTTCTCTCAATTCCGATCGAG GGGCTGTTAGTGTGGTATCGACTGCCAGGGAAGATTGGGTTCCTTATGTGGATTCGTCTAGAAGGGTTGAGGGCGAGGAGGAGGAGCAGCGAGTTTTGGT TAGAACCAAGGCGCGGTGGGATGAGGAGGATGGTGATGGTAATGTTCTTGATTTCCGCCAACCGTCGCAAGCGGATTGGATTAGGCAGTATGTAGAGCAA CAGGAAGAGGAGGAATCTAAAACTTGGGAAGATGATTCAGTTGATGGAAGTTTCACCAACAAGGATCCACAACCAAGAACTTATGATGTTATTGCCAAAG AGTACCATGCAGTGCGTTTGGAAGCTACAAAGGCCAAGGAAAAAGGGGACAAGAAGAGCCAAGAACAGGCAGGCCATGCTATCCGCAAACTCAAGCAAGA AATGTCTGCTCTAGGATTATCACTTGATCTCTTGGAACAAGATTTTGGGCACCAGCATGTTTCTGAGGACATGTTTTCTACTTCCACTCCTTGTGAGCAC CTTGAGGCAATAACATCATTGGACGTGGAAGGTGATTCCACCATTGTTGAATCAATAGTTGATGAAAATGATTTGGAAAGTTCAAGCTCCATTGGTTTTC CATTGAATCCTGTTCCCTCTAGTGTGCCCCTTGAGGGAGAAATTGTCTCGGAAGAATCGGAAGATGTGGAGATTGGCGACTTCTTCATAGATGATGCATC GTCTAATGATGCTTTACCTCCTGGAATATTGGAGTTACAGAAGAGGGAAAAAATGAGAGAGCTGTGTAGTGAGAAGAATTTAGAGAAATTAGAAGGTATC TGGAAGAAGGGGGACCCGCAAAAGATTCCTAAAGCTGTTCTTCACCAACTATGTCAAAAATCAGGCTGGGAAGCTCCAAAATTCAATAAAGTGCTTGAAA GGGAACTAGGTTTCTCTTATGCTGTTAGCATATTACGCAAAGCTAGTGGGAGGGGCAAGAGCAGAAAAGCTGGGGGGCTTATCAGCCTTCAACTTCCTGA TCAGGATGACACATTTGAATCTGCTGAGGATGCCCAGAACAGAGTTGCAGCATTTGCTCTTCATCAACTCTTTCCTGATCTTCCTATTCACCTAGCAATC ATCAACCCTTACTCTTCTCTTGTTTTGCAGTGGAAACAAGGGGAAACATCAAAAAGAGTGGAAGACAGTGTGGAGGATCGAAGGGCTGGTTTTGTGGATC TATTATTGAAGGCAGATGGTTCTAGTTCATCTGCTGTTGATGCTACAACTAGTTCTCAAGAAACTTTAAAAATTACCGATGTCGAAGAAACCAAGGATTC TGGTGCTGATGCAAAAGTAGAAAGAAAAAAATATGCTAAGGATGCAGAAAGTTCTTATTTGAGACAGGAGCAAGAGTCTAAAAGGAAATTGAAGAAATAC AAGGAAATGCTGTGCTCTAGAGCTGCACTTCCTATTGCTGGATTGAAGGTTGATATTTTACAAATGCTGAAGGAGAATGATGTTCTTGTTGTTTGTGGAG AAACAGGTTCTGGAAAGACTACTCAGGTCCCACAATTTATACTGGATGACATGATTGAGTCAGGTCATGGTGGAAACTGTAACATTATATGCACACAACC AAGAAGAATAGCGGCTATATCTGTTGCTGAAAGAGTTGCTGATGAGCGCTGTGAACCTTCTCCTGGTGCAGTTGGTTCTTTGGTTGGCTATCAAGTTCGG CTTGATAGCGCAAGGAATGAAAAAACAAAACTTCTCTTTTGTACAACAGGCATTCTTCTAAGGAAGCTTGCGGGGGATAGGAGTTTGAGTGGAATAACAC ATGTCATAGTTGATGAAGTGCATGAACGATCTCTTTTGGGTGATTTTCTACTCATTGTTTTGAAGAACCTGATTGAGAAGCAATCTTCTCAAGACACACC AAAACTTAAAGTTATTCTTATGTCTGCCACAGTAGATTCAAGTTTATTTTCGAGGTACTTTGGACAATGCCCTGTACTTACTGCTCAAGGCCGTACACAT CCTGTGACAAATTACTTTCTTGAGGATATATATGAATACATCAATTATAACCTGGCTTCAGATGCTCCAGCTGCTTTAAGATACGAAACATCTGCATTTG ATAAGAGTGGTCCTGTAGATAACCACAGAGGGAAGAAGAATCTAGTTTTATCTGCATGGGGTGATGATTCTCAGCTTTCAGAAGACTGTATTAACCCCCA TTATATTTCAACTAGCTACCAAACTTACAGTGAGCAAACACAAAAGAATTTGAAAAGATTGAATGAAGAAATCATTGATTATGACCTTCTTGAAGACTTG ATATGTTATGTTGATGAAACATGTGGTGAGGGTGCCATACTCATCTTTTTGCCTGGCGTGTCTGAAATTTATATGCTACTCGATAGGTTGGTTGCTTCTT ATCGATTTGGAGGACCATCTTCTGATTGGGTTCTTCCTTTGCATTCATCTATAGCATCAAAGGACCAAAAAAAGGTGTTTCTATGGCCTCCTGAAAACAT ACGCAAGGTTATTATAGCCACCAACATTGCAGAGACAAGTTTAACAATAGATGATGTCGTATATGTGATTGATTGTGGAAAACACAAGGAAAATCGTTAT AATCCTCAGAAGAAATTGACAAGCATGGTTGAAGATTGGATATCTCAAGCAAATGCAAGGCAGCGCCGAGGGAGAGCTGGACGAGTAAAACCTGGAATTT GCTTTTGCTTGTACACACGCCACAGATTTGAAAAACTCATGCGTCCTTATCAGGTTCCCGAGATGCTTCGGATGCCATTAGTGGAGCTTTCTCTGCAAAT TAAATTACTTTCTCTGGGACACATAAAGCCATTTTTATCCAAGGCTTTAGAACCTCCAAGGGAGGAGGCTATGACTTCTGCAATTTCACTGTTGTATGAG GTTGGAGCTTTAGAAGGGGATGAACAATTGACACCTCTTGGACATCATTTGGCAAAACTTCCGGTCGATGTACTGATTGGAAAGATGCTGCTTTATGGTG CAATATTTGGTTGCTTATCACCTATTCTGTCAATTTCTGCATTCCTGAGTTACAAGTCACCTTTTGTGTACCCAAAAGATGAGAAGCAAAATGTTGAAAG GGCAAAGCTTGCACTGTTAGCTGACAAGATAGATGGCTCAAATGATTCAAATTATAATGACAGGCTTTCTGACCACCTCTTAATGATGGTTGCATACAAA AAATGGGAGAAGATTTTGAGCGAGAGGGGATTTAAAGCTGCACAGCAATTTTGTGCTACTTATTTTTTGAGCAGTTCAGTTATGCACATGATAAGGGACA TGAGGACACAGTTTGGAACACTGCTAGCAGACATTGGGCTTATCAGTATTCCAAAGAGTTATCAGGTTGGGAGAATGAAGAAAGAGAATCTTGATAGTTG GCTGTCTGAAAAATCACAACCATTCAACATGTATTCACATCATTCCTCACTTGTGAAGGCAATTTTATGTGCAGGTTTATACCCCAATGTTGCTGCAACC GAACTAGGAATTACTGCAGCAACTCTCAATGGCCTAAAACAGTCCAGCAGGCCTGGAAAAAAGGATCATCCAATATGGTACGATGGAAGAAGAGAGGTTC ACATACACCCTTCTTCGGTCAACTGTAACATGAAAGCATTTCCGCACCCATTTCTTGTGTTCCTTGAAAAGGTTGAGACCAACAAAGTATTTCTGCGAGA TACTACTATTATATCTCCCTTCTCTATCTTGCTCTTTGGTGGCGAAATTAACATTCAACACCAGACTGGTCTTCTCACGATAGATGGATGGCTAAAGCTG AAAGCTTCAGCCCAATATGCTGTCTTATTTAAAGAACTCCGATCAACACTTCATGCTCTATTGAAGGAGCTGATTCGAAAGCCAGAGAATGCAACTCTTG TGGATAATGAGGTCGTCAAATCCATGATTCAGCTGTTGTTAGATGAAGACAAACCCCAAACATGA
AA sequence Show only first row Show all	>Potri.004G222900.1 pacid=42794264 polypeptide=Potri.004G222900.1.p locus=Potri.004G222900 ID=Potri.004G222900.1.v4.1 annot-version=v4.1 MAPKKPQRSSSNNKASSSKSNSSSNSGPRLQISAENENRLRRLLLNSTTTPPLQTTVTDNTNSLSKAQKAKKLKNIYEKLSCEGFSNDHIELALSSLKDN ATFETALDWLCLNLAGNELPLKFSGGTSLNSDRGAVSVVSTAREDWVPYVDSSRRVEGEEEEQRVLVRTKARWDEEDGDGNVLDFRQPSQADWIRQYVEQ QEEEESKTWEDDSVDGSFTNKDPQPRTYDVIAKEYHAVRLEATKAKEKGDKKSQEQAGHAIRKLKQEMSALGLSLDLLEQDFGHQHVSEDMFSTSTPCEH LEAITSLDVEGDSTIVESIVDENDLESSSSIGFPLNPVPSSVPLEGEIVSEESEDVEIGDFFIDDASSNDALPPGILELQKREKMRELCSEKNLEKLEGI WKKGDPQKIPKAVLHQLCQKSGWEAPKFNKVLERELGFSYAVSILRKASGRGKSRKAGGLISLQLPDQDDTFESAEDAQNRVAAFALHQLFPDLPIHLAI INPYSSLVLQWKQGETSKRVEDSVEDRRAGFVDLLLKADGSSSSAVDATTSSQETLKITDVEETKDSGADAKVERKKYAKDAESSYLRQEQESKRKLKKY KEMLCSRAALPIAGLKVDILQMLKENDVLVVCGETGSGKTTQVPQFILDDMIESGHGGNCNIICTQPRRIAAISVAERVADERCEPSPGAVGSLVGYQVR LDSARNEKTKLLFCTTGILLRKLAGDRSLSGITHVIVDEVHERSLLGDFLLIVLKNLIEKQSSQDTPKLKVILMSATVDSSLFSRYFGQCPVLTAQGRTH PVTNYFLEDIYEYINYNLASDAPAALRYETSAFDKSGPVDNHRGKKNLVLSAWGDDSQLSEDCINPHYISTSYQTYSEQTQKNLKRLNEEIIDYDLLEDL ICYVDETCGEGAILIFLPGVSEIYMLLDRLVASYRFGGPSSDWVLPLHSSIASKDQKKVFLWPPENIRKVIIATNIAETSLTIDDVVYVIDCGKHKENRY NPQKKLTSMVEDWISQANARQRRGRAGRVKPGICFCLYTRHRFEKLMRPYQVPEMLRMPLVELSLQIKLLSLGHIKPFLSKALEPPREEAMTSAISLLYE VGALEGDEQLTPLGHHLAKLPVDVLIGKMLLYGAIFGCLSPILSISAFLSYKSPFVYPKDEKQNVERAKLALLADKIDGSNDSNYNDRLSDHLLMMVAYK KWEKILSERGFKAAQQFCATYFLSSSVMHMIRDMRTQFGTLLADIGLISIPKSYQVGRMKKENLDSWLSEKSQPFNMYSHHSSLVKAILCAGLYPNVAAT ELGITAATLNGLKQSSRPGKKDHPIWYDGRREVHIHPSSVNCNMKAFPHPFLVFLEKVETNKVFLRDTTIISPFSILLFGGEINIQHQTGLLTIDGWLKL KASAQYAVLFKELRSTLHALLKELIRKPENATLVDNEVVKSMIQLLLDEDKPQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	0	1
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	1.00	0.8245
AT5G49530			SIN-like family protein (.1)		Potri.007G028600 [exp]	2.00	0.8140
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	2.23	0.8129
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	3.31	0.7877
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	6.00	0.8113
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	6.32	0.8238
AT2G30530			unknown protein		Potri.013G160100 [exp]	6.92	0.7734
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	8.66	0.8222
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	9.53	0.8072
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Potri.005G026400 [exp]	10.19	0.7449

Compare expression of checked genes

Potri.004G222900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.