Plant FIBer expression Database

Potri.004G223000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24330 478 / 1e-166 Protein of unknown function (DUF1682) (.1)
AT5G49945 455 / 2e-157 Protein of unknown function (DUF1682) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015491
[exp]
232 / 9e-74 AT4G24330 343 / 2e-117 Protein of unknown function (DUF1682) (.1)
Lus10019957
[exp]
196 / 3e-60 AT4G24330 306 / 3e-103 Protein of unknown function (DUF1682) (.1)
Lus10019958
[exp]
89 / 2e-20 AT4G24330 100 / 7e-25 Protein of unknown function (DUF1682) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07946 DUF1682 Protein of unknown function (DUF1682)
Representative CDS sequence
>Potri.004G223000.1 pacid=42794485 polypeptide=Potri.004G223000.1.p locus=Potri.004G223000 ID=Potri.004G223000.1.v4.1 annot-version=v4.1
ATGACCCGACCCGTTTCCCTTCTCTACTTCCTCCCTCTCTTACTTCTCCTCCTCCTCTCTCTCTTCTACCATGTCCTCGCCGATTCCCACTTCGAAGGAT
TCGAAGCTGAAGAAGAAGACGACGTCGTCGAGGAAACAATAGATCCCAACGCTTTCAAACTACCCGATCTCCCTTTAACTCTGTCCGAGTCACCGCCCAT
ATCAACTCCAACTCCGGATCCTAAAGAACCGGATCCGAAACCCTCCAAACCCTCTCCCCCACCTTCAACGACCAACTTCGAGTTCTGGGACGAAGACGAA
TTCGAAGGACTCCCTTCTCATCAACCCCACATCGAATCCGTGGTAATTACCGAGTCTGCCACTCCAGATGCCACCGTCCAAACGCCGGATCCAAAACCCT
CCACCGTTTCGAAAAAGAAGCAGTCCTTCTTGGTGGAGATTGTGTGTGTGAGTTTTTTGATTATGTTTGTGATAAATTACTTCACTGGTAAAAGAGAGAA
TGAGAACTTGGCGTTATCTTGGGCGTCGAAATTTGCGACGAAAGATTCGATTTTTGAGAAGAATTTTAGTCTTTTAGGTGTGGGAGAAGGGGATGATTCC
CCTTTATTGTTGAAAGAAGGGCAGAATGTGTTTAAATTCTATGCGAGTGGACGGAGGTATTGTCAAGGGTTGTTGGCGACAATGGAGTTGAAGAGTAGGC
ATGATTTGTTGTCCAGGATATATAATATGGTGGTCCCATGTAAGGATGAGATTAGTATTGAGGTTTATATGAATGATGATGCGATGGATCATGTGGTTTT
TGCCTTGGCGAGGAAGAAGATGGCGAAAGCAATGCAGAAGGAATTGAGGGATTTGCAGAGGTTTGCTGGGAGTGTTGTGCAGCCGCCTAATGGGAGGAAA
TGGGTGGCTGAGGAGTTGGCTGTTGTTTCTGAGTCTAAGGAAGTTGCTGGGGATTTGATCACTGAGGCCGTGCTTGAGCAGGTTTTTGGTGAGAAATCAT
TTGAGAAACATGGCAAGGGCTTCATCTCAATGCATGTCTCTGATCAACTCCCTGGCACACAGAAGAAGATGCTATTGTTCAAATTTGCTCTTCCTGATGC
CAAAAACATGGCTGACATGACCCGGCTGGTGGCTTTGGTACCCTATTACATTGATCTAGTTGGGCGCTACAAGCTGAGTTCACAGGCTCGTTCTAAAACA
GAGGCGGCCAGAGCGAAAGCTGCCCAAGAGGCATACAAAGAACTTCAAGGTGCAAGACAAGAAGCTTTACAGAAAAAGAAGGCAGAGAGGAAAAAGATGT
TAGAGGAGGCCGAAGCAAAGCTCGGTGCAGAGGCAATTCGCAAGAAAGAAGAAAAGGAGCGTGCTCGTCAGATGAAGAAGGCAATGCCAAAAGTAAAGAT
GACCCGTGGTCACTAG
AA sequence
>Potri.004G223000.1 pacid=42794485 polypeptide=Potri.004G223000.1.p locus=Potri.004G223000 ID=Potri.004G223000.1.v4.1 annot-version=v4.1
MTRPVSLLYFLPLLLLLLLSLFYHVLADSHFEGFEAEEEDDVVEETIDPNAFKLPDLPLTLSESPPISTPTPDPKEPDPKPSKPSPPPSTTNFEFWDEDE
FEGLPSHQPHIESVVITESATPDATVQTPDPKPSTVSKKKQSFLVEIVCVSFLIMFVINYFTGKRENENLALSWASKFATKDSIFEKNFSLLGVGEGDDS
PLLLKEGQNVFKFYASGRRYCQGLLATMELKSRHDLLSRIYNMVVPCKDEISIEVYMNDDAMDHVVFALARKKMAKAMQKELRDLQRFAGSVVQPPNGRK
WVAEELAVVSESKEVAGDLITEAVLEQVFGEKSFEKHGKGFISMHVSDQLPGTQKKMLLFKFALPDAKNMADMTRLVALVPYYIDLVGRYKLSSQARSKT
EAARAKAAQEAYKELQGARQEALQKKKAERKKMLEEAEAKLGAEAIRKKEEKERARQMKKAMPKVKMTRGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24330 Protein of unknown function (D... Potri.004G223000
[exp]
0 1
AT1G79920 AtHsp70-15 heat shock protein 70-15, Heat... Potri.001G180100
[exp]
1.41 0.8796 Pt-HSP91.2
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Potri.007G100000
[exp]
2.23 0.8369
AT2G15240 UNC-50 family protein (.1) Potri.001G300100
[exp]
3.74 0.8330
AT3G63460 EMB2221 transducin family protein / WD... Potri.009G055400
[exp]
4.47 0.8404
AT2G41490 GPT UDP-glcnac-adolichol phosphate... Potri.016G042100
[exp]
4.89 0.8290 Pt-GPT.3
AT1G61790 Oligosaccharyltransferase comp... Potri.011G025700
[exp]
6.48 0.8196
AT2G18840 Integral membrane Yip1 family ... Potri.018G093800
[exp]
9.05 0.8637
AT2G27260 Late embryogenesis abundant (L... Potri.001G218300
[exp]
9.21 0.8132
AT5G47420 Tryptophan RNA-binding attenua... Potri.001G155900
[exp]
10.58 0.7543
AT1G79940 ATERDJ2A DnaJ / Sec63 Brl domains-conta... Potri.004G072200
[exp]
10.77 0.7748

Potri.004G223000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.