Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 647 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 559 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 202 / 4e-59 esterase/lipase/thioesterase family protein (.1) AT2G03140 94 / 9e-20 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115000 [exp] 551 / 0 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 209 / 3e-61 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 102 / 3e-22 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035744 [exp] 650 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 650 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 641 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 633 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 613 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 294 / 5e-95 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 206 / 2e-60 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 173 / 3e-48 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10035741 [exp] 144 / 6e-40 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10033426 [exp] 101 / 7e-22 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.004G223100.1 pacid=42795599 polypeptide=Potri.004G223100.1.p locus=Potri.004G223100 ID=Potri.004G223100.1.v4.1 annot-version=v4.1 ATGGAAGAAGATTACAGAGCATCATCATACGACTACGACGAGCTCTTCGTCAAATCTCTGTCTCTTTTTTCAATCTCTCAGAATCATCTCCTACTCCTCC TCCTCCTCCTATTCATCGTCCTCCTCCTCTTCCTAGCATTTCTAGTCTTTTTCTACAATTTTCTTGAGATACACTTTCTCGCCGATTTACTCACCGCCTT CAGAGGCGACCCTGTGTCGCTCACCTATAATCCCAGCTCTCAACTCTACAAATCCGTCGCTTCCAAGTGCAGCATCCTCCACGGAAGGTTTTTGCCTACT CCATGGCTATCAAGTCCTCATCTCCAAACAGCTTTCTTGAGTCTTGTTGCAAAATCTCCTCATGTCACCTACAAAAGACACATGTTTTTTGCTACTGATG GCGGTACCATTGCTCTGGACTGGCTAATGTCTTCTGATGTTAAAGGTGCTTCCTGCACAAATGATGCAACTCGAGAAAATGATAAAACTCCTATTTTGAT CGTGATTCCTGGTTTAACAAGTGACTCGGGTTCTGCTTATGTAAAGCATCTCGTAGATAGGATGGCAAAGCATGGCTGGAATGTTGTTGTGAGCAATCAT CGTGGACTTGGAGGCATATCAATAACTTCTGATTGCTTCTACAATGCTGGGTGGACAGAGGATGTACGAAAGGTCATTGATCATATTCATTGTCAATATC CTGAAGCTCCTTTATATGCTGTTGGAACTAGTATTGGGGCAAATATTTTGGTGAAATATCTTGGAGAAGATGGGGTTAATTGTCTTCTTGTTGGAGCTGC GGCTGTCTGCTCTCCTTGGGACCTTTTGATATGTGATAGATATATCAATCGTAGACTTGTGCAGAAATTGTATGACAAAGTGCTAACAGTTGGCCTACAA GGTTATGCACAACTGCATGAGTCTATCTTGTCACGTCTTACAGATTGGGATGGTGTAAAGAAGTCACGTTCTGTTCGAGACTTCGACAACTATGCAACCC GCATTCTTGGAAAATTTGAGACTGTTGATGCATATTACAGGCGTTCTAGTTGTGTGAATTTTGTGGGAAATGTATCAGTGCCTCTTCTGTGCATCAGTGC CATGGATGATCCAGTTTGTACAAGGGAGGCCATCCCATGGGATGAATGCAGGGCAAATGAAAATATTATCCTTGCTGTCACACAGCATGGCGGACACCTT GCTTATTATGAGGGGATATCTGCAGATAGCATGTGGTGGGTGAGAGCTGTAGATGAATTCTTTGATGTCTTGCAGTCTAGCCCATTAAGCAACAGAAGAA AGAAGGTGGAAGGGCCTAGCTTGTCCATTCCACCGGAGTCTTCAATTGATCAAGGACCTTATGTGAATGTCTCGGAGGATGGCATGGTGACTGCTGTTGG CAACAGTCAAGAAGATTTCATAGCTGAAGATGAATGCAATGAAGATGTGGACCACATCAGGAAGGATGAAGATGCCATTTTGCACGAAGAAAGAAGTGAT CTTTTGACAGAGAAAACCCATTCTAAAGTTGACCTCAACCAGCCATTGGATCAGAATCTCAATGATTTGGATGTTCCTGTTAGAAGACGAATGGATCAGC TTTTACGACTGAATAGAAATTCGATCTGGCTCCTTGCTTACATTGCTATCGTAACAACCTGGCCCCTTGTCGGTTCTGCTCTTCTTCCTTTTCTCAAGAA AAGATTCAAGAGCATCATACCGTCTGCTTTGCGTAGAAGATAG
AA sequence Show only first row Show all	>Potri.004G223100.1 pacid=42795599 polypeptide=Potri.004G223100.1.p locus=Potri.004G223100 ID=Potri.004G223100.1.v4.1 annot-version=v4.1 MEEDYRASSYDYDELFVKSLSLFSISQNHLLLLLLLLFIVLLLFLAFLVFFYNFLEIHFLADLLTAFRGDPVSLTYNPSSQLYKSVASKCSILHGRFLPT PWLSSPHLQTAFLSLVAKSPHVTYKRHMFFATDGGTIALDWLMSSDVKGASCTNDATRENDKTPILIVIPGLTSDSGSAYVKHLVDRMAKHGWNVVVSNH RGLGGISITSDCFYNAGWTEDVRKVIDHIHCQYPEAPLYAVGTSIGANILVKYLGEDGVNCLLVGAAAVCSPWDLLICDRYINRRLVQKLYDKVLTVGLQ GYAQLHESILSRLTDWDGVKKSRSVRDFDNYATRILGKFETVDAYYRRSSCVNFVGNVSVPLLCISAMDDPVCTREAIPWDECRANENIILAVTQHGGHL AYYEGISADSMWWVRAVDEFFDVLQSSPLSNRRKKVEGPSLSIPPESSIDQGPYVNVSEDGMVTAVGNSQEDFIAEDECNEDVDHIRKDEDAILHEERSD LLTEKTHSKVDLNQPLDQNLNDLDVPVRRRMDQLLRLNRNSIWLLAYIAIVTTWPLVGSALLPFLKKRFKSIIPSALRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49950			alpha/beta-Hydrolases superfam...		Potri.004G223100 [exp]	0	1
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Potri.002G051900 [exp]	1.41	0.8018	HMCA902
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	3.60	0.8187
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	10.95	0.7552
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	11.83	0.7713
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	12.64	0.7824
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	18.08	0.7887
AT5G57070			hydroxyproline-rich glycoprote...		Potri.006G145900 [exp]	27.74	0.7355
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	27.98	0.7620
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.005G242700 [exp]	29.18	0.7501
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G011650 [exp]	35.74	0.7778

Compare expression of checked genes

Potri.004G223100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.