Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24320 437 / 2e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 261 / 1e-82 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 205 / 1e-61 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 198 / 7e-59 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 190 / 5e-56 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 151 / 2e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 138 / 3e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G45790 127 / 9e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 122 / 3e-30 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 117 / 3e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115500 [exp] 287 / 7e-90 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 209 / 3e-63 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 192 / 1e-56 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.008G036600 [exp] 178 / 3e-51 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 143 / 3e-38 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 128 / 2e-32 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 124 / 5e-31 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 122 / 8e-31 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G245100 [exp] 119 / 2e-29 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005750 [exp] 325 / 2e-108 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 268 / 6e-83 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 268 / 9e-83 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027445 [exp] 228 / 3e-73 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 224 / 4e-69 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 217 / 3e-66 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 193 / 1e-56 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 179 / 3e-52 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 180 / 6e-52 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 141 / 2e-37 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.004G223200.1 pacid=42794654 polypeptide=Potri.004G223200.1.p locus=Potri.004G223200 ID=Potri.004G223200.1.v4.1 annot-version=v4.1 ATGATGATGTCTCTCTACAGCACCAAACTCCCACACCAACTCAACCAAGCCAGGACCTTCATAGCTGCCAGGATCAAATGGGCCTGTGACCCTTACCTAG ACACAGCTGTTTCCAAAGAAAAAGACTTGAAACAAGTCATTTCTATCAAGAACCAACTAATTTCCTCTCCCTCCAAATCCCTCCCTCTTTCCTCTCTTTC CCTTCTAAAACCCTACTTCAACATCTCCACTACAGCCCTCAATTTCTTCCATAAGTACTCCACAGTTTTCTCTCAATTCCAGCCCTCCCCTTCCCTGCCC TTCCACATCAAACTCACCCCTCAAGCTATCTCACTTCACAAGGAGGAGCAACTCATTCTAAAGTCACAACCTTTACGTGATGACACCATAAAAAGGTTAG CTAAACTCTTAATGCTTTCCGGGGCAAAAAGATTGCCTTTGCATATTGTTGATAGGTTCAAGTATGATTTGGGTTTGCCTCATGATTATATTACTGCCCT TTTATCAGATTATCCTGAATATTTCAATGTCTGCGAGGATAAAGATTGTTTAACTAATAAAGACACGTTCTTTTTAGAGCTGGTTTCTTGGAAAGATGAG TTAGCTGTGTCTGAAATGGAGAAAAGAGTGTCACTTGAGGATTTGAGGAATGTTAAGAGAGGGGAGAGAATTGGGTTTCCTTTAAATTTCCCAAATGGGT TTGATTTAAAGAAGAAAGTGAGAGATTGGGTTTTCGAATGGCAAGGTTTGCCATACATATCGCCCTATGAAAATGCTTTTCATTTGAATCCCAATGGGGA TCAAGCTGAGAAGTGGACTGTCACGGTTTTACATGAGTTGTTGTGGTTGTTAGTGTCAAAGAAGACGGAGAAAGAGAATGTGCTTCAATTGGGGGATTAT TTGGGGTTTGGGAACAGGTTTAATAAGGCTTTGGTGCATCATCCAGGGATTTTTTATGTTTCCAATAAGATTAGGACACAGACTGTGGTGCTTAGAGAGG CTTATAGGAAGGGCTTCTTAATGCATAAGCATCTTCTAATGGGAATGAGGTTTAGGTATATTCGTCTTATGAGTAAAGCTAAGAAGAAGAGAAGAAAATC AGTTGGTGGTGTTTCACATTCTCAATTGCAAAGGCAGGTTTCATCTACCAAAAAAGGGATAGAAAGAAAAGCTAAATATAAAAGCAGGGAGGAAGAAGAA GAGAGATCAAATGACTCTTTAGAATCTGAATTTGAGGATGTGGGGTCTTCAGACTCCAACCTTGAGGATGCGAATAGTGATGGGACGATGAAGATGAAGA TGTGA
AA sequence Show only first row Show all	>Potri.004G223200.1 pacid=42794654 polypeptide=Potri.004G223200.1.p locus=Potri.004G223200 ID=Potri.004G223200.1.v4.1 annot-version=v4.1 MMMSLYSTKLPHQLNQARTFIAARIKWACDPYLDTAVSKEKDLKQVISIKNQLISSPSKSLPLSSLSLLKPYFNISTTALNFFHKYSTVFSQFQPSPSLP FHIKLTPQAISLHKEEQLILKSQPLRDDTIKRLAKLLMLSGAKRLPLHIVDRFKYDLGLPHDYITALLSDYPEYFNVCEDKDCLTNKDTFFLELVSWKDE LAVSEMEKRVSLEDLRNVKRGERIGFPLNFPNGFDLKKKVRDWVFEWQGLPYISPYENAFHLNPNGDQAEKWTVTVLHELLWLLVSKKTEKENVLQLGDY LGFGNRFNKALVHHPGIFYVSNKIRTQTVVLREAYRKGFLMHKHLLMGMRFRYIRLMSKAKKKRRKSVGGVSHSQLQRQVSSTKKGIERKAKYKSREEEE ERSNDSLESEFEDVGSSDSNLEDANSDGTMKMKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	0	1
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	5.47	0.8966
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	7.54	0.9151
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	9.48	0.8836
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	12.48	0.8844
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	14.69	0.8762
AT5G41620			unknown protein		Potri.002G166600 [exp]	16.67	0.8194
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	18.46	0.8611
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	18.81	0.8863
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	21.56	0.8735
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	22.36	0.8697

Compare expression of checked genes

Potri.004G223200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.