Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 1133 / 0 unknown protein AT5G02940 185 / 3e-48 Protein of unknown function (DUF1012) (.1) AT5G43745 179 / 2e-46 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008800 [exp] 1601 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.019G097000 [exp] 990 / 0 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 987 / 0 AT5G49960 927 / 0.0 unknown protein Potri.008G160700 [exp] 193 / 9e-51 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 191 / 6e-50 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035805 [exp] 1384 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 1249 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10013455 [exp] 976 / 0 AT5G49960 936 / 0.0 unknown protein Lus10041014 [exp] 777 / 0 AT5G49960 749 / 0.0 unknown protein Lus10041011 [exp] 630 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 193 / 5e-51 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [poplar] [flax] TrkA_C PF06241 [poplar] [flax] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Potri.004G223400.1 pacid=42796182 polypeptide=Potri.004G223400.1.p locus=Potri.004G223400 ID=Potri.004G223400.1.v4.1 annot-version=v4.1 ATGGCAAAAGTAAAGAAAGACTCAGTCTCACCACCACCACCACCGTCACCTCTACCAGCAGCAGCAGCAGCTACAAATGACGACACAAGAAGGGCAACTG AAAGACCACTTCTAAAGAAAATAAAAAGCACATCATCATCAATATCGGATGACACTCGCTTTCCTGGCCCACTGTTTCCTTCTGTTCGCCGGACTGCTGC TCCGCCACTAATGCCATCCATTCACCACCACCATCATCACCACCTCCGCCCTCCACCGTCGGATCTCCGTCTCTCCAAAGATTCAGTCTCCTCAAACAAT AACTTTAACAACAGTAGTGCTAATGGTGGTACTAATAGCATTGATATTAGTGGTAGTAATATTACCAGTGATAATTTAAACTTCTCGGTTGATAGGGACT GGATGTACCCCTCTTTTCTTGGGCCCCACGTGGCTAGAAATCGGGTCACGGTGAAGGGTCGCCGTGGTAATAATAAGGCGGATGTGGAGGTGGAGGAGAA GCACAACACCGGAGCTGCCGCCTCTTATACTACTGCTAGTCATGATACTGATCAGGGGAAAGTGAAAGATGAGAAATTGTTGAAGGTAGATAACAATAAT AATAATATTAAGGAAGTGAAAACAGCTGCTACTGCCACTCAAGTTTTGGTGACTCAGTCTAGTGTCAACAGAAGCAGGGGACTCAAATCTTCTTTCATCT ATTATTTGCTTAATTTCACTTGTATAGTATCTGTTTCTTGTTCAATTTACTTGTGGAATGAAGTCGCGAAACTAGAGGAAGAGAATATTGACCTCCGTAC AGTGTGTTGCAATAAAGTTGGTGTTGGTAATGACAGCATGGAAGTTTTGCAGGCTGAAGACAACAGTTCGTTTTCTTTCGGAAATGCTGACAGTAGGACT GTTGCTTTTTATACTGTCATGTTCACACTCATCATGCCATTTGTGCTGTACAAATATCTTGATTATTTTCCCCAAATAAAGACACTCTCCAAAAGGACAA TGAATAACAAGGAGGAGGCTCCGCTGAAGAAGAGAATTGCTTATATGGTGGATGTCTGCTTCTCTGTTTATCCTTATGCAAAGCTCCTTGCACTGCTCGT TGCGACCATCTTTCTTATAGGATTCGGTGGGTTAGCACTGTATGCTGTCAGTGATGGTAGCTTGGCCGAAGCTCTTTGGCTTTCATGGACATTCGTAGCT GATTCAGGAAATCATGCTGACAGGGTTGGCACTGGCCCAAGAATCGTTTCTGTCTCCATAAGTTCAGGAGGCATGCTAATATTTTGCATGATGCTTGGAC TTGTCTCGGATGCTATCTCAGAAAAAGTAGATTCGCTGCGGAAAGGAAAGAGCGAAGTAATCGAAAAGAACCATATACTAATTCTTGGATGGAGTGACAA ATTGGGCTCACTTTTGAAGCAACTAGCAATAGCAAACAAGAGTGTCGGTGGCGGTGTTATAGTTGTACTAGCAGAGAGAGACAAGGAAGAAATGGAGATG GATATAGCAAAGCTCGAATTTGACTTGATGGGAACTTCTGTTATATGCAGAAGTGGCAGTCCCCTTATCCTGGCTGACTTAAAGAAAGTTTCAGTATCGA AGGCACGTGCTATTATTGTATTAGCATCTGATGAAAATGCAGATCAGAGTGATGCGCGAGCCTTGAGAGTTGTTCTCAGCCTAACAGGAGTTAAAGAGGG TTTGAAGGGTCATGTTGTTGTAGAGATGAGTGACCTTGACAATGAACCTCTGGTGAAGCTTGTTGGAGGGGAACTCATTGAAACTGTTGTTGCACATGAT GTGATTGGACGCTTGATGATTCAGTGCGCTCTACAACCAGGTCTTGCACAGATCTGGGAAGATATACTGGGGTTTGAGAATGCAGAATTTTACATCAAAA GGTGGCCCCGATTGGATGGTCTGCGTTTTCAAGATGTGCTCATTTCATTTCCTGAAGCAGTTCCCTGTGGAGTTAAGGTTGCGGCTGAAGGCGGAAAGAT AAATTTAAATCCTGATGATAACTATGTTCTGAAAGAAGGAGATGAAGTCCTTGTTATAGCCGAGGATGATGACACCTACGCTCCAGGTCCTCTTCCAGAG ATACATTGGAGTTCTTGTCCGAAAATAATTGATCCTCCAAAATATCCAGAAAAGATACTGTTCTGTGGCTGGCGACGTGACATTGATGACATGATAATGG TTCTGGAAGCATTACTTGCTCCAGGTTCAGAACTGTGGATGTTCAATGAGGTCCCAGAAAAAGAGAGAGAGAAAAAGCTTACTGATGGGGGACTTGATAT TCCTGGATTAGAGAACATAACACTCGTCCACCGTGAGGGAAATGCTGTCATTAAACGGCATTTGGAGAGTCTTCCTCTTGAGACCTTTGATTCTATATTA ATTCTTGCAGATGAGTCATTGGAAGACTCCATTGTGCATTCCGACTCAAGATCTCTAGCCACCCTCCTCCTTATTCGAGAGATACAGTTAACGCGTCTCC CTTACAGAGATGTTAAGCCAACTTCTTTACGGGTTTCTGGGTATTCTCACAGCTCATGGATCCGTGAAATGCAACAAGCTTCTGACAAATCAATAATTAT TAGTGAAATCTTAGACTCTAGGACTAGAAACCTTGTCTCTGTGTCCAGAATCAGTGATTATGTGCTATCAAATGAGCTGGTAAGTATGGCACTTGCAATG GTAGCTGAAGACAAGCAAATAAATCGTGTTCTTGAGGAACTGTTCGCGGAGGAGGGCAATGAGATGTGCATTAAACCAGCAGAATTTTACCTGTTTGATC AGGAAGAGATTCCTTTTTATGAGATAGTGATTAGAGGTCGTCAAAGAAATGAAATCGTGATTGGTTTTCGCCTTGCAAACGCCGAGCGCGCCATCATTAA CCCTCCTGAAAAGTTGCAACCAAGAAAATGGTCCCTTGCTGATGTTTTTGTTGTCATCTCCTTGGGTGACTGA
AA sequence Show only first row Show all	>Potri.004G223400.1 pacid=42796182 polypeptide=Potri.004G223400.1.p locus=Potri.004G223400 ID=Potri.004G223400.1.v4.1 annot-version=v4.1 MAKVKKDSVSPPPPPSPLPAAAAATNDDTRRATERPLLKKIKSTSSSISDDTRFPGPLFPSVRRTAAPPLMPSIHHHHHHHLRPPPSDLRLSKDSVSSNN NFNNSSANGGTNSIDISGSNITSDNLNFSVDRDWMYPSFLGPHVARNRVTVKGRRGNNKADVEVEEKHNTGAAASYTTASHDTDQGKVKDEKLLKVDNNN NNIKEVKTAATATQVLVTQSSVNRSRGLKSSFIYYLLNFTCIVSVSCSIYLWNEVAKLEEENIDLRTVCCNKVGVGNDSMEVLQAEDNSSFSFGNADSRT VAFYTVMFTLIMPFVLYKYLDYFPQIKTLSKRTMNNKEEAPLKKRIAYMVDVCFSVYPYAKLLALLVATIFLIGFGGLALYAVSDGSLAEALWLSWTFVA DSGNHADRVGTGPRIVSVSISSGGMLIFCMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAIANKSVGGGVIVVLAERDKEEMEM DIAKLEFDLMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLKGHVVVEMSDLDNEPLVKLVGGELIETVVAHD VIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPRLDGLRFQDVLISFPEAVPCGVKVAAEGGKINLNPDDNYVLKEGDEVLVIAEDDDTYAPGPLPE IHWSSCPKIIDPPKYPEKILFCGWRRDIDDMIMVLEALLAPGSELWMFNEVPEKEREKKLTDGGLDIPGLENITLVHREGNAVIKRHLESLPLETFDSIL ILADESLEDSIVHSDSRSLATLLLIREIQLTRLPYRDVKPTSLRVSGYSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAM VAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEIPFYEIVIRGRQRNEIVIGFRLANAERAIINPPEKLQPRKWSLADVFVVISLGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49960			unknown protein		Potri.004G223400 [exp]	0	1
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G060300 [exp]	3.87	0.9113	RGP3.3
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080400 [exp]	5.47	0.8589
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G103600 [exp]	11.74	0.8947
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Potri.001G325600 [exp]	12.32	0.8168
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G183800 [exp]	19.74	0.8161
					Potri.008G069050 [exp]	21.44	0.8792
					Potri.010G171166 [exp]	22.13	0.6793
					Potri.019G014330 [exp]	23.49	0.8782
					Potri.002G132850 [exp]	24.00	0.8757
					Potri.004G075950 [exp]	24.91	0.8732

Compare expression of checked genes

Potri.004G223400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.