Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58025 295 / 3e-92 DNA-binding bromodomain-containing protein (.1.2.3) AT3G52280 69 / 2e-12 GTE6 general transcription factor group E6 (.1.2) AT5G63320 68 / 8e-12 NPX1 nuclear protein X1 (.1.2.3) AT2G34900 65 / 3e-11 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT5G46550 64 / 2e-10 DNA-binding bromodomain-containing protein (.1) AT1G06230 62 / 7e-10 GTE4 global transcription factor group E4 (.1.2.3) AT5G14270 62 / 1e-09 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G01770 61 / 1e-09 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G65630 59 / 6e-09 GTE7 global transcription factor group E7 (.1) AT5G10550 59 / 1e-08 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073800 [exp] 66 / 3e-11 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.011G077100 [exp] 65 / 1e-10 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.013G118900 [exp] 65 / 1e-10 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.008G043000 [exp] 64 / 1e-10 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.011G096400 [exp] 64 / 2e-10 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.009G080000 [exp] 64 / 2e-10 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.001G355300 [exp] 64 / 2e-10 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.001G376400 [exp] 63 / 2e-10 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 64 / 3e-10 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037368 [exp] 242 / 2e-72 AT1G58025 246 / 2e-74 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035797 [exp] 169 / 1e-47 AT1G58025 162 / 1e-45 DNA-binding bromodomain-containing protein (.1.2.3) Lus10036580 [exp] 152 / 2e-38 AT1G58025 147 / 4e-37 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035798 [exp] 94 / 2e-19 AT1G40087 101 / 1e-22 Plant transposase (Ptta/En/Spm family) (.1) Lus10018900 [exp] 67 / 5e-12 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10032076 [exp] 67 / 2e-11 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10011989 [exp] 67 / 3e-11 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10014609 [exp] 67 / 3e-11 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10029774 [exp] 64 / 1e-10 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10002784 [exp] 64 / 2e-10 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.004G223700.1 pacid=42795098 polypeptide=Potri.004G223700.1.p locus=Potri.004G223700 ID=Potri.004G223700.1.v4.1 annot-version=v4.1 ATGAAGAAGCGAAAGAGAGCGAGGAAGAAAGGAAAAGCAGCGAAGCCAAAAGCCGAAGCTGCGGTGAGCGGTGGCGAGGGTTCTGCCGATGAAGATCAAA CACTTATCAATTTAATCACTCTAAGCAGGGAAGATCATAATGATGATCATGACGGTGATGATGATGATGATGATGATAATCAATCTCCAATGGAGGTCAA TACACCTTCTTCCACCGGAACCGACCAGCCATTGCATCTTGCAAGTATTAATCCTGATGGTTCTATCGATAAGGCTGCTGCCACGGCAGCATCAGGAGGA GGAGGAGTAAAGGGTGTTGGGCGTGTGAAGGTTAAGCTAAAAAGTTCGAAGATTTTGGAGTCTCGGACTGATACGGATAGGAGTAGCCCAGTGCAGAACT TGGGGTTGGAGAAACAAGGTGAGGATAGTGGGAATTCGGTTGTTCCTGAAATTAAGATGTATGTTTCGAGGAGACCTGGGGGTATAAAGATTAAGTCTTC TTCGTCGACGAAGGTGTTGGGAGGAGGAGGAAGAGGAGGAGGTGCGAGCAGTGGTGATGTGGTGGTGGTGGAGGATGAGGATGAGGATGAGGGTTTGCCA AACAAGGAATTGGAGACGCCACATAAGGAGAATCGATATGATAAGAAAGAATTGGATTCTGCCTTATTGGTTATTAAGAAGGTGATGAAAATGGATGCAG CCGAACCCTTTAACGCTCCTGTCAATCCTGATGCTCTTGGAATACCTGATTATTTTGATATCATAGATACACCAATGGACTTTGGAACAATCTGCAGCAA TCTTGAGAAAGGTGACAAGTACATGAATTCAAAGGATGTCTACAAGGATGTTCAATACATTTGGTACAACTGTTTTAAGTATAACAGCAAAGGTGACTAT ATCTTGGATCTTATGAAGCGTGTTAAGAAGAATTTTATGAAGTATTGGACAACAGCTGGGTTATACACTGAACTATCAAAAGGAAGTAATGGTGATGAAG GTGTTCATGGTGAGGATGTTGCAGCTTCTAGTCATGCACATAATAAAATTGTGCCACCAAAGAAGTCAAAAAAGCGTCATGGAAGGCGCCATAAACTTGA TTGTTTATGTGCCATATGTGTTCTAAAGCGCCGTAGAAGAGAGCGAGAAGAGAATGCTCGACTTGCTAAAGGCCAGATCGGAGTTTCTGATAACGAACTT GGTCAAGAGTTCAAGCAAGAGGAATCTTCACTTGCCGGAAGTCCTTGTGAGGATTCATCATCAAATATGGGTGAATCATTGGACCCAGATGCGTATGTTG AAGTGGAAGGAAAAGCACATGAGGGGAAAGTGGAGGTTACAGAAAGGCAGCAGAGCCCTGTGGAGAAGCGAGAGGAGGAGGAGGAGGAGGAGGAAGAGGA GGAGGAGGAGGACGATGAAGAAGAAGATGAAGACAATGAGATGGAGATTCAGAAGCAAGGGAAGGATGAATTACCAGAGAAATCACAGTTTGCTGATGGA TCTGGGAAGGAGCCTAATCAACAACCTCAGCCTGTAATATCCGAAAATGCAAATATCCGTATACATATTCAGAAAGATGCATTAGTGCTGCAAGAGGAAG AAACTATGGCAGTTCAGCAAAATAAGCGCAAGTTGCAGGAATTGCAAGAAAGGGAAGAGAAGGTTAAAGTGTTTAAGAAATTCTACATTGAAAATCCCTT GCTTCTCAGCCTATGTGGAACTCTATTCCCTGACAATCAAAGATCTGTCTGGAGTGGACCTCACTCGCTGGTTCAGCATCAGGATTCTGGCCATACAAGT TCCATTCATGCTGCCATTGAGACGTTTATGAAGTAG
AA sequence Show only first row Show all	>Potri.004G223700.1 pacid=42795098 polypeptide=Potri.004G223700.1.p locus=Potri.004G223700 ID=Potri.004G223700.1.v4.1 annot-version=v4.1 MKKRKRARKKGKAAKPKAEAAVSGGEGSADEDQTLINLITLSREDHNDDHDGDDDDDDDNQSPMEVNTPSSTGTDQPLHLASINPDGSIDKAAATAASGG GGVKGVGRVKVKLKSSKILESRTDTDRSSPVQNLGLEKQGEDSGNSVVPEIKMYVSRRPGGIKIKSSSSTKVLGGGGRGGGASSGDVVVVEDEDEDEGLP NKELETPHKENRYDKKELDSALLVIKKVMKMDAAEPFNAPVNPDALGIPDYFDIIDTPMDFGTICSNLEKGDKYMNSKDVYKDVQYIWYNCFKYNSKGDY ILDLMKRVKKNFMKYWTTAGLYTELSKGSNGDEGVHGEDVAASSHAHNKIVPPKKSKKRHGRRHKLDCLCAICVLKRRRREREENARLAKGQIGVSDNEL GQEFKQEESSLAGSPCEDSSSNMGESLDPDAYVEVEGKAHEGKVEVTERQQSPVEKREEEEEEEEEEEEEDDEEEDEDNEMEIQKQGKDELPEKSQFADG SGKEPNQQPQPVISENANIRIHIQKDALVLQEEETMAVQQNKRKLQELQEREEKVKVFKKFYIENPLLLSLCGTLFPDNQRSVWSGPHSLVQHQDSGHTS SIHAAIETFMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	0	1
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	1.41	0.7998
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	3.46	0.7663
AT4G30790			unknown protein		Potri.006G180800 [exp]	7.34	0.7581
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	11.61	0.7637
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	12.32	0.7439
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	13.49	0.7728
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	16.34	0.7667
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G035500 [exp]	16.52	0.6969	SFB1.2
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	18.33	0.7440	Pt-ATHK1.2
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	18.73	0.7249

Compare expression of checked genes

Potri.004G223700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.