Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09810 353 / 8e-116 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 281 / 1e-87 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 273 / 8e-83 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G13060 271 / 1e-82 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G55500 269 / 3e-82 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G61020 261 / 3e-80 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G17330 259 / 1e-79 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 262 / 4e-79 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G03950 250 / 5e-77 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT5G58190 249 / 2e-75 ECT10 evolutionarily conserved C-terminal region 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008400 [exp] 995 / 0 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.008G080800 [exp] 340 / 4e-109 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 328 / 2e-104 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.014G001000 [exp] 279 / 2e-85 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 278 / 5e-85 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.019G034300 [exp] 270 / 6e-83 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G056100 [exp] 270 / 2e-82 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G002000 [exp] 267 / 2e-81 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 267 / 3e-81 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035790 [exp] 597 / 0 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037365 [exp] 584 / 0 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 566 / 0 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10018343 [exp] 278 / 1e-84 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10017111 [exp] 277 / 6e-84 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10033335 [exp] 263 / 4e-79 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 261 / 6e-79 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10034792 [exp] 261 / 1e-78 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 257 / 1e-77 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 258 / 5e-77 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G223800.1 pacid=42793828 polypeptide=Potri.004G223800.1.p locus=Potri.004G223800 ID=Potri.004G223800.1.v4.1 annot-version=v4.1 ATGGCCACCGAAACCAAACTCGAGAAACGATTGGAGCCAAACCCTGTTGTTGCTAAACCAGTTGACAACAATGTGGTTTCTGGAAAAGATGGAATCCCAT CAGATTCAACTCCCACCATTTTGTCATCTGGGAGTGGTGCTTCTGACACCAAAGTTAATGGTAGTGCTGCATCTACCACCAAAAAGGAGGGTGATCAAGA GCCACATGCTGCCTTTGTCCCCCCTACTAGTAGTTATAATTATCAATACCCAGGCTATAGTGGGTCCTTCACGCCATTGGATGATCATGGCTATTATCAA GCAGATGGTTCTCATATGGGTATGCAATCAGATAATGGTTCAATGGTTTATTATTGGCCTAGCTATCCATATGCTTCAGGGACGGTAGTTGGTGTTGAGG GGCAAAGTGTTGCTCAACAGCCATATTTTTCTTCCTCTGGATATCTACAGCATCCTGTGTCCTATGGATTAGAAACCATGCCTTGTTATTCATGGGATTC AACATATGTTGGTGATGTCTCAAATGGAAATGCTGGTTTTGAAAATGGAAAAAGTGGCTCGGGTTCCACTGCTTTTGCCAAGTCAAGTGGATTCAACTCT GTAAAATCTAATAGCAACGTTGGAAGCAAATTTTCCAAGCCTATGTATACACAACCTGCCAGACCTATGACCAAGGTTTCTCCGCTGGGTTCAGATTTTT CAGCAGGCCTTTACAAGGGATACCAACCTATGGGAAAGTTTCCTCCATTTACTGGCCAAAAACAAGGTCCATTCCCGCACAGTGGTCCATTGAACTACAG GCAAAATGTAAGAATGTGGAATGGGAATTACAGAAACAAACCAAGGGATAGATTCAATAGAAATGGTGATTTTGAAAACCAAACTGAATTAACTCGTGGT CCTAGGGCATCCATCAAAAATGCTCCTTTGGACGACTCGGTAAAAAATAATGCTCCATTGGACTCCTCAGTGAAGGACATGTTGGGATTTGCAATGCATA AGGAGCAATACAACTTACCAGATTTTGAAATTGAGTATTCAAATGCCAAGTTTTTTGTTATCAAGTCTTACAATGAAGATGATATTCACAAGAGCATTAA ATATGATGTATGGGCAAGTACCCCAAATGGCAATAAGAAGCTAGATGCTGCATTCCACAATGCAGAAGAGGTTTCAAGTGAGACCGGCACCAAATGTCCA ATTTTCCTCTTTTTTTCAGTAAATGGAAGTGGACAGTTTGTTGGCTTAGCTGAGATGGTTGGTCAGGTAGACTTCAATAAAGACATGGATTTTTGGCAAA TTGACAAGTGGAATGGTTTCTTCCCAGTTAAGTGGCATGTAATAAAAGACATTCCTAACGGTCAGCTGCGGCATATTGTGCTTGAGAATAACGATGGGCA TTCTGTAACTTTCAGCCGGGACACTCAAGAGATTGGACTCGAGAAAGGTTTGGAAATGCTTAATATTTTCAAGAGCTATTCTGCAAAAACATCTATGTTA GATGACTTCAACTTCTATGAAAATCGAGAGAAGTCACTTAATACCAAAAAGAGCAACAAACCTGCAACTTTGCGAATGGAAATATTTGAGAACAGTGATT TCCCTAAACATACAGCAGCTGAAGAAAAGATATCTGAAGATGACTCAAGGGCCAAGAAAACTACCAATCCCTCGACTCTGATCAATTTAACTAAAAATCT CTCACTCAATGGTCACAACCAGAAGAGTAACTCTGTAAAGAAGCCGATAGGAAATTCAGCCTCCCCTGTTCCTGCACCATAG
AA sequence Show only first row Show all	>Potri.004G223800.1 pacid=42793828 polypeptide=Potri.004G223800.1.p locus=Potri.004G223800 ID=Potri.004G223800.1.v4.1 annot-version=v4.1 MATETKLEKRLEPNPVVAKPVDNNVVSGKDGIPSDSTPTILSSGSGASDTKVNGSAASTTKKEGDQEPHAAFVPPTSSYNYQYPGYSGSFTPLDDHGYYQ ADGSHMGMQSDNGSMVYYWPSYPYASGTVVGVEGQSVAQQPYFSSSGYLQHPVSYGLETMPCYSWDSTYVGDVSNGNAGFENGKSGSGSTAFAKSSGFNS VKSNSNVGSKFSKPMYTQPARPMTKVSPLGSDFSAGLYKGYQPMGKFPPFTGQKQGPFPHSGPLNYRQNVRMWNGNYRNKPRDRFNRNGDFENQTELTRG PRASIKNAPLDDSVKNNAPLDSSVKDMLGFAMHKEQYNLPDFEIEYSNAKFFVIKSYNEDDIHKSIKYDVWASTPNGNKKLDAAFHNAEEVSSETGTKCP IFLFFSVNGSGQFVGLAEMVGQVDFNKDMDFWQIDKWNGFFPVKWHVIKDIPNGQLRHIVLENNDGHSVTFSRDTQEIGLEKGLEMLNIFKSYSAKTSML DDFNFYENREKSLNTKKSNKPATLRMEIFENSDFPKHTAAEEKISEDDSRAKKTTNPSTLINLTKNLSLNGHNQKSNSVKKPIGNSASPVPAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	0	1
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	2.44	0.8172
AT2G35790			unknown protein		Potri.010G219400 [exp]	3.00	0.8234
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G054900 [exp]	7.14	0.7910	Pt-TOM20.1
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	7.48	0.7866
AT2G24590		RSZ22a, At-RSZ2...	RS-containing zinc finger prot...		Potri.006G272400 [exp]	9.16	0.7288	SRZ.3
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	9.16	0.7737
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	9.53	0.7545
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	10.24	0.7360
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	11.18	0.7844
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	13.30	0.7025

Compare expression of checked genes

Potri.004G223800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.