Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51280 1072 / 0 DEAD-box protein abstrakt, putative (.1) AT4G33370 904 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 312 / 7e-100 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 303 / 3e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 305 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 295 / 2e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 294 / 3e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 295 / 8e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 290 / 5e-90 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 293 / 6e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047301 [exp] 712 / 0 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G038300 [exp] 313 / 4e-100 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 309 / 6e-98 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 309 / 2e-97 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 310 / 1e-95 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 303 / 8e-95 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 297 / 1e-92 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 296 / 3e-92 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G158000 [exp] 294 / 3e-92 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023252 [exp] 1043 / 0 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10008856 [exp] 888 / 0 AT5G51280 851 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10012899 [exp] 322 / 1e-107 AT5G51280 318 / 1e-106 DEAD-box protein abstrakt, putative (.1) Lus10015627 [exp] 313 / 4e-100 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 313 / 4e-100 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 311 / 6e-98 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 310 / 1e-97 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015977 [exp] 300 / 3e-95 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 303 / 4e-95 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 303 / 5e-95 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.004G224000.3 pacid=42795074 polypeptide=Potri.004G224000.3.p locus=Potri.004G224000 ID=Potri.004G224000.3.v4.1 annot-version=v4.1 ATGGAGGAAGAGGATAACTACGTGGAGTATGTTCCTGTGGCGAAGCGTCGAGCATTGACAGCTCAAATGATTCTTCAGAGAAGGGGAAATATCTCTGCTT TAGAGGATGAACTTGAAAAATCAAAACTTGCAGAAGCCAAACCCAGTCTCCTGGTCAAAGCATCTCAGCTCAAGCGTGACCAACCTGAAATTAGTCAGAC GGAGCAGATTGTGCAACAAGAAAAAGAAATGATAGAGCATCTATCTGATAAGAAAACACTCATGTCAGTTCGTGAGTTGGCCAAGGGAATCACATATACG GAGCCATTGTTGACAGGATGGAAACCGCCGCTTCCAATCAGGAAAATGTCCAGGAAGGAATGTGATGCAATTCGAAAACAGTGGCATATAATAGTTGATG GTGAAAAAATTCCTCCACCGATTAAACATTTTAAAGATATGAGGTTTCCCGAGCCTATTTTGAAAATGCTAAAAGCCAAAGGGATTGTGCAACCTACTCC TATTCAGGTGCAAGGTCTTCCCGTTATCTTAACAGGAAGGGACATGATTGGGATTGCCTTCACAGGATCTGGGAAGACGCTTGTTTTTGTGCTTCCACTG ATTATGATTGCCTTACAGGAGGAGATTATGATGCCCATCATGCCTGGAGAAGGCCCTGTTGGTTTGATTGTCTGCCCATCAAGAGAACTTGCCAGACAAA CTTATGAAGTTGTGGAAGAATTTTTGATTCCGATGAGAGCAGCTGGGTATCCAGAACTGAGGCCATTACTATGTATTGGTGGAGTGGATATGAGGTCACA GTTGGAGATTGTAAAGAAGGGTGTGCACATTGTAGTTGCAACTCCTGGAAGGTTGAAGGACATGCTAGCAAAGAAGAAAATGAGCCTGGACAACTGCAGG TACTTGACATTGGATGAAGCAGATAGATTAGTGGATTTGGGCTTTGAGGATGACATAAGGGAAGTTTTCGACCACTTCAAAGCCCAAAGGCAAACTCTTT TATTCTCTGCCACCATGCCCACCAAAATTCAGAATTTTGCTAGAAGTGCTCTCGTGAAGCCTGTCACTGTTAATGTGGGAAGAGCCGGGGCAGCAAACCT TGATGTGATTCAGGAGGTTGAGTATGTAAAACAGGAGGCAAAGATTGTTTACCTTCTTGAGTGCCTACAGAAGACACCACCTCCTGTATTGGTATTTTGT GAGAACAAGGCTGATGTGGATGACATTCATGAGTATCTCCTCCTGAAGGGAGTGGAGGCTGTTGCCGTTCATGGAGGCAAAGACCAGGAAGAGAGGGAGT ATGCGATTTCATCATTTAAAGCAGGCAAGAAAGATGTCCTGGTTGCAACTGATGTCGCCTCAAAAGGGTTGGATTTTCCTGACATTCAACATGTAATTAA CTATGACATGCCTGCTGAAATTGAAAACTATGTACATAGGATTGGGCGAACAGGAAGATGTGGTAAGACTGGAATCGCAACGACCTTTATAAACAAAAAC CAGAGTGAGACAACACTTCTTGATCTGAAGCACCTCTTGCAAGAAGCGAAGCAGAGGATTCCTCCTGTTTTAGCTGAGTTAAATGATCCAATGGAAGATG GAGACACGATTACTAGTGCAAGTGGAGTTAAAGGGTGTGCTTATTGTGGTGGTCTCGGTCACCGCATCCGTGATTGCCCCAAGTTGGAGCATCAGAGAAG CCAGCAACTTGCAAACTCCAGGAGGGATTATTTCGGGTCTGGTGGTTATAGGGGAGAAATCTGA
AA sequence Show only first row Show all	>Potri.004G224000.3 pacid=42795074 polypeptide=Potri.004G224000.3.p locus=Potri.004G224000 ID=Potri.004G224000.3.v4.1 annot-version=v4.1 MEEEDNYVEYVPVAKRRALTAQMILQRRGNISALEDELEKSKLAEAKPSLLVKASQLKRDQPEISQTEQIVQQEKEMIEHLSDKKTLMSVRELAKGITYT EPLLTGWKPPLPIRKMSRKECDAIRKQWHIIVDGEKIPPPIKHFKDMRFPEPILKMLKAKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPL IMIALQEEIMMPIMPGEGPVGLIVCPSRELARQTYEVVEEFLIPMRAAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMSLDNCR YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLVFC ENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN QSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDGDTITSASGVKGCAYCGGLGHRIRDCPKLEHQRSQQLANSRRDYFGSGGYRGEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51280			DEAD-box protein abstrakt, put...		Potri.004G224000 [exp]	0	1
AT3G57990			unknown protein		Potri.016G046900 [exp]	3.46	0.8965
					Potri.001G310801 [exp]	3.74	0.8945
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G323800 [exp]	7.07	0.8860
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	10.09	0.8905
AT1G07470			Transcription factor IIA, alph...		Potri.001G244204 [exp]	12.32	0.8575
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073500 [exp]	13.67	0.8750
AT5G13520			peptidase M1 family protein (....		Potri.010G215700 [exp]	14.45	0.8690
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	14.86	0.8698
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	16.43	0.8793
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	18.22	0.8874

Compare expression of checked genes

Potri.004G224000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.