Plant FIBer expression Database

Potri.004G224200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09812 118 / 4e-35 unknown protein
AT1G58007 103 / 2e-29 unknown protein
AT1G11120 92 / 4e-24 unknown protein
AT4G28170 55 / 5e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G006900
[exp]
258 / 3e-90 AT1G09812 105 / 6e-30 unknown protein
Potri.011G045900
[exp]
102 / 2e-28 AT1G11120 133 / 2e-40 unknown protein
Potri.004G037200
[exp]
101 / 6e-28 AT1G11120 147 / 9e-46 unknown protein
Potri.019G103800
[exp]
88 / 8e-23 AT1G11120 119 / 5e-35 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037361
[exp]
135 / 3e-41 AT1G09812 97 / 2e-26 unknown protein
Lus10035787
[exp]
130 / 5e-39 AT1G09812 96 / 8e-26 unknown protein
Lus10018462
[exp]
83 / 7e-21 AT1G11120 122 / 3e-36 unknown protein
Lus10039796
[exp]
80 / 1e-19 AT1G11120 122 / 3e-36 unknown protein
Lus10011221
[exp]
74 / 3e-17 AT1G11120 121 / 8e-36 unknown protein
Lus10018564
[exp]
59 / 9e-12 AT1G11120 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G224200.4 pacid=42793778 polypeptide=Potri.004G224200.4.p locus=Potri.004G224200 ID=Potri.004G224200.4.v4.1 annot-version=v4.1
ATGAGTGAGCTAGGTTCTGAAAGATCAAAGCCATGGAACATATACACAAGTTCAGACCCTGCACCATCTCAAACAGGAGAAATTGATAGGGAAGCTCCAT
GGAAAAGTTTTGGAACGTCCATGAATGCCATTTCTTTTGGTTTTGTTGCAACAGCAATCTTGATATCAATGTTTCTGATAATGGCCATCTTCGAACATCT
GTTTAGGCCTAATCCTTCTTTTTCTACACCTCAAGAAGTCACCGATGGTTCTTCAGAATCAAGACCACTACACAAACTTGGCAACCCTCAAACGGTCCCA
GCAGCTTATGCATCAGATTTTGCAGTAGTGATGCCTGGACAGCAGCTTCCAACTTATATTGCCCAACCAGCACCCTTACCTTGTCCAAGGGAAAAGATTT
ATTGGCCTAACCATGAGCAAAACCTTGTATTTCCTTGA
AA sequence
>Potri.004G224200.4 pacid=42793778 polypeptide=Potri.004G224200.4.p locus=Potri.004G224200 ID=Potri.004G224200.4.v4.1 annot-version=v4.1
MSELGSERSKPWNIYTSSDPAPSQTGEIDREAPWKSFGTSMNAISFGFVATAILISMFLIMAIFEHLFRPNPSFSTPQEVTDGSSESRPLHKLGNPQTVP
AAYASDFAVVMPGQQLPTYIAQPAPLPCPREKIYWPNHEQNLVFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09812 unknown protein Potri.004G224200
[exp]
0 1
AT1G20540 Transducin/WD40 repeat-like su... Potri.002G011200
[exp]
4.47 0.8977
AT2G45200 ATGOS12, GOS12 golgi snare 12 (.1.2) Potri.014G066800
[exp]
6.40 0.8977 GOS12.1
AT5G62880 ARAC10, ATRAC10... RHO-RELATED PROTEIN FROM PLANT... Potri.012G077800
[exp]
10.58 0.8556
AT1G77110 PIN6 PIN-FORMED 6, Auxin efflux car... Potri.005G187500
[exp]
10.90 0.8493 PIN4,Pt-PIN6.2
AT5G48740 Leucine-rich repeat protein ki... Potri.002G242700
[exp]
13.03 0.8639
AT2G24765 ARF3, ARL1, ATA... ARF-LIKE 1, ADP-ribosylation f... Potri.018G096077
[exp]
16.73 0.8685
AT5G57330 Galactose mutarotase-like supe... Potri.001G037700
[exp]
21.28 0.8836
AT2G44740 CYCP4;1 cyclin p4;1 (.1) Potri.012G114600
[exp]
21.33 0.8757
AT1G35780 unknown protein Potri.005G165500
[exp]
23.04 0.8658
AT3G56810 unknown protein Potri.006G026600
[exp]
23.66 0.8761

Potri.004G224200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.