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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G53840	49 / 4e-06	F-box/RNI-like/FBD-like domains-containing protein (.1)
AT4G13960	47 / 1e-05	F-box/RNI-like superfamily protein (.1)
AT1G47915	43 / 1e-05	F-box family protein (.1)
AT3G59000	45 / 4e-05	F-box/RNI-like superfamily protein (.1.2)
AT3G12840	41 / 9e-05	unknown protein
AT5G38386	44 / 0.0001	F-box/RNI-like superfamily protein (.1)
AT3G58880	44 / 0.0001	F-box/RNI-like superfamily protein (.1)
AT5G38390	44 / 0.0002	F-box/RNI-like superfamily protein (.1)
AT1G06630	43 / 0.0002	F-box/RNI-like superfamily protein (.1.2.3)
AT3G58900	43 / 0.0002	F-box/RNI-like superfamily protein (.1.2.3.4)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G092600 [exp]	59 / 9e-10	ND	/
Potri.011G121400 [exp]	42 / 0.0003	AT1G16930	149 / 9e-40	F-box/RNI-like/FBD-like domains-containing protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10003089 [exp]	69 / 3e-13	AT5G53840	54 / 3e-08	F-box/RNI-like/FBD-like domains-containing protein (.1)
Lus10021237 [exp]	66 / 5e-12	ND	/
Lus10028602 [exp]	66 / 5e-12	AT1G80960	50 / 1e-06	F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Lus10028722 [exp]	62 / 2e-10	AT2G42730	76 / 1e-14	F-box family protein (.1.2)
Lus10018863 [exp]	52 / 1e-07	AT5G44950	62 / 1e-10	F-box/RNI-like/FBD-like domains-containing protein (.1)
Lus10004372 [exp]	46 / 2e-05	AT5G47310	244 / 1e-77	PPPDE putative thiol peptidase family protein (.1)
Lus10020292 [exp]	46 / 3e-05	AT1G60410	76 / 9e-15	F-box family protein (.1)
Lus10034290 [exp]	44 / 0.0002	AT5G02910	53 / 2e-07	F-box/RNI-like superfamily protein (.1.2)
Lus10019167 [exp]	40 / 0.0006	ND	45 / 3e-06

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF08387 [poplar] [flax]	FBD	FBD

Representative CDS sequence

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>Potri.004G224975.1 pacid=42794016 polypeptide=Potri.004G224975.1.p locus=Potri.004G224975 ID=Potri.004G224975.1.v4.1 annot-version=v4.1

ATGAGTCAAACAAGGTTTAATAACTTTATATACTCAGAACTTGAGCAAGATTATGAATCCAAAAAGGTGTGTGCTGCATCGACTCTTGGTGAGTTACCTG

ATGAAATTCTTTTTTTCAATATTCTTTCTCTTTTGACAACCAAAGAAGCTGCAAGAACTAGTGTTCTTTCAAGTCGATGGAGGAAATTACAAATCAATTT

TGCAATCGAAAAGAAAGTCAAGAAACTTGAGATGAACTTATCAAACTGTCGTGGTATCAGTCAATATAACAAGTACTTTTTTCCGCATAAAGATTTTCCT

ACATGCAATTCATTGACTACTCTCCGATTGAAGAACGTCAACGTAACCGGAGAAGTTATTGAGCACTTCCTATCCAATTATCTTGCCCTTGAAACATTAT

ATATACAATCCTCAGATAGTCTAGTAAATCTGAAAGTTGCCGGTCCATTGCTTCGACTCAAGTATTTGGAGATAAGATATTGCTCAGTCAAGAATTTTTG

CAAGCTCTCAAGATATCTGTATCAAATAGATACACTTACATTGCATGAGAACATGCTGAAGATCCTTGAAGTTCCTGTGCTGACCAATCTCAAGCAATTG

AAGTTCATAGCCGATGTAATAGATAGAGATCCCACATTTCTCGCCATCACCTCGTTGATTGAGGCAGCTTCTTTTTTGCAGAGATTTATTTTTCAGGTAT

CTCAAAAGTCAATGCTTAAGCTCCTTACATTTGGAGAAGAGAACAAAAGGTGCCCTCATCAACACCTTAAGGTGGTGGAAATCCTTGAGTTTACAGGCGA

AGCCGTAAAAGTTGAGCTTGCGTTATATATAATAGAAAATGCTGTCGTCCTTGAAAACATTATTTTTGACACTAGAAATCCAGTATTGATAGGAACACAA

TGGGAGTTTAAAGAAAGTAAAGACAGAAAAATGGGGAGAAGGTGTGCTAGGAAATTGGGTGCAAAACTACATCTGGGAGTCACTTGA

AA sequence

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>Potri.004G224975.1 pacid=42794016 polypeptide=Potri.004G224975.1.p locus=Potri.004G224975 ID=Potri.004G224975.1.v4.1 annot-version=v4.1

MSQTRFNNFIYSELEQDYESKKVCAASTLGELPDEILFFNILSLLTTKEAARTSVLSSRWRKLQINFAIEKKVKKLEMNLSNCRGISQYNKYFFPHKDFP

TCNSLTTLRLKNVNVTGEVIEHFLSNYLALETLYIQSSDSLVNLKVAGPLLRLKYLEIRYCSVKNFCKLSRYLYQIDTLTLHENMLKILEVPVLTNLKQL

KFIADVIDRDPTFLAITSLIEAASFLQRFIFQVSQKSMLKLLTFGEENKRCPHQHLKVVEILEFTGEAVKVELALYIIENAVVLENIIFDTRNPVLIGTQ

WEFKESKDRKMGRRCARKLGAKLHLGVT

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53840			F-box/RNI-like/FBD-like domain...		Potri.004G224975 [exp]	0	1

Potri.004G224975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.004G224975 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.004G224975 coexpression network