Plant FIBer expression Database

Potri.004G225500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09830 771 / 0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013696
[exp]
745 / 0 AT1G09830 733 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Lus10005561
[exp]
738 / 0 AT1G09830 734 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF02843 GARS_C Phosphoribosylglycinamide synthetase, C domain
CL0483 PreATP-grasp PF02844 GARS_N Phosphoribosylglycinamide synthetase, N domain
CL0179 ATP-grasp PF13535 ATP-grasp_4 ATP-grasp domain
Representative CDS sequence
>Potri.004G225500.1 pacid=42795451 polypeptide=Potri.004G225500.1.p locus=Potri.004G225500 ID=Potri.004G225500.1.v4.1 annot-version=v4.1
ATGTCTTGTGCTACCTTAAGCCTACCACCTTCTCTCAAACTTCTCAATAGCTGCTTTCAGCCTTCAAACAAGAAATCTTGTTTCCTCAGCAGCTCGTTTT
CTTCGGTAAGCTTTGTGGGACCCTTGACTTCCTATGGTAACAAAAGCTCTTGGGACTCATGCCATGTAATTAAGGGCTTAAGATCGTTTCCCATCGTCTT
CAAATGTGTTGCTCAGAAATCAGAGCTGTCGGTTTCAGTTGGTGCTGGCAGCAATATTGCTTCTGAAAAGAGGTTGGTTGTGTTGGTTATTGGTGGAGGG
GGAAGAGAACATGCACTTTGCTATGCCTTGCAGCGATCTCCCTCCTGTGATGCAGTCTTCTGTGCTCCTGGCAATGCAGGGATTTCTAACTCTGGAAATG
CTACCTGTATTCCAGAGCTTGACATCTCTGATAGCTCAGCAGTGATCTCCTTTTGCCGCAAATGGGGTGTTGGACTGGTTGTTGTGGGACCAGAGGCACC
TTTGGTTTCTGGCCTTGCAAATGATTTAGTAAAAGCTGGAATCCCTACTTTTGGGCCATCAGCAGAAGCAGCTGCTTTAGAAGGTTCAAAGAACTTCATG
AAAAATTTGTGCGACAAATATAAAATTCCTACTGCTAAGTACCAAACATTTACAGATCCATCTTCTGCAAAGCAATACATTGAGGACCAGGGAGCACCTA
TTGTCATAAAAGCAGATGGCTTGGCTGCTGGAAAAGGAGTTATTGTTGCCATGACACTAGAGGAGGCATATGAAGCTGTTGATTCAATGCTCGTGAAGAG
TGTTTTTGGTTCTGCAGGTTGTTGCGTAGTTGTTGAAGAATTTCTGGAAGGAGAAGAAGCGTCTTTCTTTGCCCTGGTGGATGGAGAGAATGCTATTCCT
CTAGAATCTGCTCAGGACCATAAAAGAGTTGGTGATGGAGACACAGGTCCCAATACTGGTGGGATGGGGGCATACTCTCCAGCACCAGTATTGACAAAAG
AACTTCAGTCAGTGGTCATGCAAACTATAATTCACCCAACAGTCAAGGGAATGGCAGCCGAGGGTTGCAAGTTTGTAGGTGTTTTGTATGCTGGGCTGAT
GATTGAGAAGAAGACTGGCTTACCTAAGCTAATTGAGTACAATGTACGCTTTGGCGACCCTGAGTGTCAGGTGTTGATGGTTCGCTTGGAATCGGATCTA
GCACAAGTCCTGCTTGCAGCTAGTAGAGGAGAGCTAAGTGGAGTGTCCCTGAAATGGTCTCCAGGGTCTGCCATGGTGGTGGTTATGGCAAGCAAGGGGT
ACCCTGGGTCCTATGAAAAGGGGACTGTGATTCAAAACCTTGAGGAGGCTGAGAATGTTGCTCCAACAGTTAAGATATTTCATGCCGGAACTGCCTTGAA
CTCAGACGGCAACTTCATTGCTACTGGGGGCCGAGTTCTTGGGGTCACTGCCACTGGAAGAGATCTTGAAGAGGCCCGGGACAGAGCTTATCAGGCAGTT
GAGGAAATCAACTGGCCAGGAGGGTTCTACCGGCGAGATATTGGGTGGAGAGCGCTTCCTCAGAAGCAATTGGCTCCAAAAAAATAA
AA sequence
>Potri.004G225500.1 pacid=42795451 polypeptide=Potri.004G225500.1.p locus=Potri.004G225500 ID=Potri.004G225500.1.v4.1 annot-version=v4.1
MSCATLSLPPSLKLLNSCFQPSNKKSCFLSSSFSSVSFVGPLTSYGNKSSWDSCHVIKGLRSFPIVFKCVAQKSELSVSVGAGSNIASEKRLVVLVIGGG
GREHALCYALQRSPSCDAVFCAPGNAGISNSGNATCIPELDISDSSAVISFCRKWGVGLVVVGPEAPLVSGLANDLVKAGIPTFGPSAEAAALEGSKNFM
KNLCDKYKIPTAKYQTFTDPSSAKQYIEDQGAPIVIKADGLAAGKGVIVAMTLEEAYEAVDSMLVKSVFGSAGCCVVVEEFLEGEEASFFALVDGENAIP
LESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMQTIIHPTVKGMAAEGCKFVGVLYAGLMIEKKTGLPKLIEYNVRFGDPECQVLMVRLESDL
AQVLLAASRGELSGVSLKWSPGSAMVVVMASKGYPGSYEKGTVIQNLEEAENVAPTVKIFHAGTALNSDGNFIATGGRVLGVTATGRDLEEARDRAYQAV
EEINWPGGFYRRDIGWRALPQKQLAPKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09830 Glycinamide ribonucleotide (GA... Potri.004G225500
[exp]
0 1
AT5G59500 protein C-terminal S-isoprenyl... Potri.009G033700
[exp]
1.73 0.9595
AT1G32580 plastid developmental protein ... Potri.008G169900
[exp]
3.16 0.9632
AT3G53630 unknown protein Potri.006G082400
[exp]
11.53 0.9285
AT1G59990 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECT... Potri.008G193800
[exp]
12.24 0.9407
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.005G175400
[exp]
12.84 0.9135
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Potri.006G232300
[exp]
13.41 0.9121
AT1G10522 unknown protein Potri.010G094900
[exp]
16.24 0.9391
AT1G02140 MAGO, HAP1, MEE... MATERNAL EFFECT EMBRYO ARREST ... Potri.002G138500
[exp]
17.43 0.9198
AT1G72040 P-loop containing nucleoside t... Potri.013G109400
[exp]
17.49 0.9217
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.007G009500
[exp]
17.74 0.9282

Potri.004G225500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.