Plant FIBer expression Database

Potri.004G225600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12244 250 / 6e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035777
[exp]
266 / 9e-91 AT1G12244 200 / 1e-64 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0580 YqgF PF03652 RuvX Holliday junction resolvase
Representative CDS sequence
>Potri.004G225600.1 pacid=42794201 polypeptide=Potri.004G225600.1.p locus=Potri.004G225600 ID=Potri.004G225600.1.v4.1 annot-version=v4.1
ATGTCTTGTTCACTCTCATACTCAAACCAGTTGCCTTTCTTCTCTAAAAGGGCATCCACCAATCTCCTATTTCCCAATTTCACTACGTCTTCCCTTCAAC
TTGATAGTGATAAGCCATGCCGAAGAAGATTAAGGGCTCTGTTATCCATTCAAGAAATCCCCCCCAATGCCCTTCGCCGGAAGAATGACCCACTGTGGAG
AGGAGGGTTTAGTCTAGGGGTCGACTTGGGACTGTCTCGCTCTGGTGTTGCCCTTAGCAAAGGCTTTACCGTTCGCCCTCTCACGGTTTTGGAATTGCGA
GGACAAAAGCTTGAGCTTCGACTTCTTGAAATTGCAGAAAACGAGGAGGTAGATGAGTTCATAATTGGGCTTCCAAAATCTTGGGATGGTAAGGAAACTC
CACAATCCAACAAAGTTCGTAGTGTTGCTGGAAGGTTTGCTGTTCTAGCTGCTCACAGGGGTTGGAGAGTGTACCTACAAGATGAACACGGTACATCAAC
GGAAGCCACTAACCGAATGATTGACATGGGCCTCAACAAGTCTACTCGGCAAAAGAAAGTCGATGCCTATGCTGCCGTGATGGTTTTAGAGAGATATTTT
TCCACGTTTGGCGAGGGAACTGAGCTTGTACTACCAAAACAATCAGATCTACAAGAAAAACTTCAAAGAGGTCCACCAGCGGACATAGATTTTTATCCAG
AATAA
AA sequence
>Potri.004G225600.1 pacid=42794201 polypeptide=Potri.004G225600.1.p locus=Potri.004G225600 ID=Potri.004G225600.1.v4.1 annot-version=v4.1
MSCSLSYSNQLPFFSKRASTNLLFPNFTTSSLQLDSDKPCRRRLRALLSIQEIPPNALRRKNDPLWRGGFSLGVDLGLSRSGVALSKGFTVRPLTVLELR
GQKLELRLLEIAENEEVDEFIIGLPKSWDGKETPQSNKVRSVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVDAYAAVMVLERYF
STFGEGTELVLPKQSDLQEKLQRGPPADIDFYPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12244 Polynucleotidyl transferase, r... Potri.004G225600
[exp]
0 1
AT3G52380 CP33, PDE322 PIGMENT DEFECTIVE 322, chlorop... Potri.016G068300
[exp]
9.32 0.9565 CP33.2
AT5G11270 OCP3 overexpressor of cationic pero... Potri.006G251700
[exp]
11.66 0.9503
AT4G27340 Met-10+ like family protein (.... Potri.011G125700
[exp]
14.35 0.9167
AT4G18975 Pentatricopeptide repeat (PPR)... Potri.011G076800
[exp]
14.83 0.9268
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Potri.016G099400
[exp]
15.36 0.9472 IM30.2
AT5G62840 Phosphoglycerate mutase family... Potri.015G074700
[exp]
15.49 0.9460
AT3G52155 Phosphoglycerate mutase family... Potri.006G000600
[exp]
15.87 0.9447
AT5G65840 Thioredoxin superfamily protei... Potri.014G012100
[exp]
18.24 0.9479
AT5G14100 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRIN... Potri.017G067804
[exp]
19.44 0.9403
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Potri.010G248700
[exp]
27.12 0.9393

Potri.004G225600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.