Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 242 / 5e-74 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G005700 [exp] 699 / 0 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.019G077500 [exp] 290 / 5e-92 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035769 [exp] 440 / 2e-150 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2) Lus10037346 [exp] 415 / 1e-140 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10037347 [exp] 172 / 3e-50 AT1G33980 70 / 9e-14 Smg-4/UPF3 family protein (.1.2) Lus10003510 [exp] 170 / 1e-48 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10009488 [exp] 150 / 3e-40 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10025489 [exp] 0 / 1 ND 53 / 2e-13
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF04059 [poplar] [flax] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Potri.004G225800.10 pacid=42795411 polypeptide=Potri.004G225800.10.p locus=Potri.004G225800 ID=Potri.004G225800.10.v4.1 annot-version=v4.1 ATGAAGGGTGGTGGTCAGTCTGACAAGACCAAAGTGGTGGTCCGCCACTTGCCGCCGGGGATTTCTCAGCCGATGTTTGTCGAGCAAATCGATGTTGCTT TCTCTGGCCGCTACAATTGGCTCTCCTATCGTCCTGGCAACAACAGCCAGAAGCATCAATCATATTCTAGAGCCTATATTGATTTCAAAAGGCCTGAGGA TGTTATTGACTTTGCTGAGTTCTTTAATGGCCACATATTTGTTAATGAGAAAGGCACTCAGTTTAAAGCTATTGTTGAGTATTCTCCTTCACAGCGCGTC CCAAAACAGTGGTCTAAGAAGGATGGTCGGGAAGGCACCATATCAAAAGATCCTGAGTATTTGGAGTTCCTTGAATTAATTGCAAAGCCTGTCGAGAATC TTCCCAGTGCTGAAATACAACTGGAGAGAAGAGAAGCAGAAAGAGCTGGTGCTGCAAAAGATGCTCCCATTGTCACACCTTTAATGGACTTTGTTCGACA GAAAAGAGTTGCTAAGAATGGACCTCGGAGGATATTGTCCAATGGGAAACTGAGCAGAAGGGCTGGTGGCAGTGGAAGTCCTAGTTCATCCTCATTGAAA CGGGGTTCTGAGAAGAAGAGAATTTCAACAACAATGTATGTTTTAAGGGACACTGCAAAAAGCACAAGTGGAAAAGACAAATCAACTTATGTGCACGTTC CCAAGCGAGATGATCAGCAACTTTCTAATGCTGTAACTTTGGGTTCTGGGTCTGGGACTGCAGTATTAGAAGATGAAAGCGTAGTTTCTGGAATTACTGA TTCTGGGAAGAAGAAAATCCTGCTTCTGAAAGGGAAGGAGAAGGAAATCTCACTGGTTACTGGCACCATGTCTCAGCAACAGAGCATATCATCTTCAGAT AGAAATATAATTAGTTCGACTGCTCTAAAGAGCCAGCGGCGTGAAACCAGTGGAAGGATGATCAGAAGCATACTGTTAAACAAGGATTCACGTCATATTC GATCCTCTGGAGTCCATTCTGAGCCACAGATGCAAACCTCGAATCTAGAGAAGGAAAAACGTCCTCCTCGGCCTCCACATGCACAGTTGGGTTTGAAGGA TGCAAATGGAACACCAGATGACAAGGTTGTTGGGAATGATTTGCATGGTTTTCCAAATGAGAAGCAGGAAAAGCGCACCAGAAATAAGGATAGACCTGAT CGTGGAGTGTGGACTCCTCTCCGCAGATCAGATGGATCCTATGCAAGTGATGAATCCTTGTTATCATCTGCAAGTCAATCCACACAGTCGGTGTTTGATT CTTCACAAGGAAACCATGGTGATGTAAAAGTTGACTCCTTGAATTTAAGGAGTGGAGAAGTAAAAGTTCTTGGAAGTGGGCGTGGTAATCATTCTTCTTT AGATAATGGATCACATAAACATTTTGGTCGTCGGGGACCATCACATATTGTGAGGGATGCTGATGGCTCCACTGTTGAGGCAAAAACTCCTAAAAGAGGT GGTTCTTCTGGTTATGGGTCCCATGAGAAGCAAGTCTGGGTTCAAAAGTCAACTGGTTCTTAG
AA sequence Show only first row Show all	>Potri.004G225800.10 pacid=42795411 polypeptide=Potri.004G225800.10.p locus=Potri.004G225800 ID=Potri.004G225800.10.v4.1 annot-version=v4.1 MKGGGQSDKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRPEDVIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRV PKQWSKKDGREGTISKDPEYLEFLELIAKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKLSRRAGGSGSPSSSSLK RGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLSNAVTLGSGSGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSD RNIISSTALKSQRRETSGRMIRSILLNKDSRHIRSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDANGTPDDKVVGNDLHGFPNEKQEKRTRNKDRPD RGVWTPLRRSDGSYASDESLLSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSGRGNHSSLDNGSHKHFGRRGPSHIVRDADGSTVEAKTPKRG GSSGYGSHEKQVWVQKSTGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Potri.018G127500 [exp]	2.00	0.7622
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	6.00	0.7739	SEU.1
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	6.32	0.7491
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	10.95	0.7649
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	12.00	0.7400
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	12.96	0.6792
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	17.32	0.7207
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.001G268200 [exp]	19.79	0.6973
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	22.18	0.7272
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	25.09	0.7306

Compare expression of checked genes

Potri.004G225800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.