Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) AT4G26480 252 / 6e-83 RNA-binding KH domain-containing protein (.1) AT5G56140 238 / 2e-77 RNA-binding KH domain-containing protein (.1) AT3G08620 234 / 4e-76 RNA-binding KH domain-containing protein (.1) AT2G38610 233 / 8e-76 RNA-binding KH domain-containing protein (.1.2) AT5G51300 104 / 7e-25 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G005500 [exp] 471 / 1e-169 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 256 / 8e-85 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 253 / 2e-83 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.006G111400 [exp] 251 / 4e-83 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 248 / 1e-81 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 232 / 1e-75 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 229 / 2e-74 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 107 / 9e-26 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 106 / 1e-25 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035768 [exp] 441 / 1e-157 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 441 / 2e-157 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 249 / 3e-82 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 246 / 5e-81 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 216 / 1e-68 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 212 / 3e-67 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 211 / 4e-67 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 184 / 8e-57 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 106 / 2e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16544 [poplar] [flax] STAR_dimer Homodimerisation region of STAR domain protein
Representative CDS sequence Show only first row Show all	>Potri.004G225900.1 pacid=42795432 polypeptide=Potri.004G225900.1.p locus=Potri.004G225900 ID=Potri.004G225900.1.v4.1 annot-version=v4.1 ATGGGAGAGAGAATCCCACCTGGGAGTTACTTCCAGTACCCTCCCTCTGGAGTCCATCATGCTTCTCCTCACAGGTCCACTTCTTTGCCTTCAGATCTTG AAAGATATTTGGCCGAGTTATTCGCAGAGAAGCACAAGTTGGGGCCATTTGTGCAAGTTTTACCAAATTGCTGCAGGCTTCTTAATCAAGAAATCAGAAG GGCATCAGCTTGCAATCAGGGTTTGGTAGATCATGAAAGATACGAGCATGAGAGTCCATTTAGGTCATTAGGTCAACATTCAAATGGAAGAACGATGGAT TTGGAGGCATGGTCTGCTATGCCAACTGAGGAGAATGGGCATCTTCAAAGAATGGCCTCATTTCCAGCTGCTTCAATGGGTTGGCCTGGGGTCCCTGGAA TTCCAATCACGCCTGTTGTAAAGAGAGTAATTAGACTTGATGTTCCTGTTGATAAATACCCAAGTTATAATTTTGTTGGCCGAATCTTGGGACCACGAGG GAACTCCTTGAAAAGAGTTGAAGCCTTGACAGATTGTAGGGTGTATATAAGAGGCAAGGGCTCCGTAAAGGATTCTCTAAAGGAAGAAAAACTAAAAGAC AAGCCTGGATATGAGCACCTTAATGAACCGCTGCATGTGTTGGTGGAGGCTGAATTTCCAGAGGATATAATAAATGCCCGCCTGGAACATGCAATAACCA TATTAGAAAGCCTCCTGAAGCCTGTGGACGAATCCTTGGATCACTATAAGAAACAGCAATTGAGGGAACTGGCTTTGCTAAATGGTACTCTAAGGGAGGA AAGTCCAAGCATGAGCCCTAGCATGAGCCCAAGCATGTCACCCTTCAATACTGCCGGAATGAAACGAGCCAAGACAGGAAGATGA
AA sequence Show only first row Show all	>Potri.004G225900.1 pacid=42795432 polypeptide=Potri.004G225900.1.p locus=Potri.004G225900 ID=Potri.004G225900.1.v4.1 annot-version=v4.1 MGERIPPGSYFQYPPSGVHHASPHRSTSLPSDLERYLAELFAEKHKLGPFVQVLPNCCRLLNQEIRRASACNQGLVDHERYEHESPFRSLGQHSNGRTMD LEAWSAMPTEENGHLQRMASFPAASMGWPGVPGIPITPVVKRVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVEALTDCRVYIRGKGSVKDSLKEEKLKD KPGYEHLNEPLHVLVEAEFPEDIINARLEHAITILESLLKPVDESLDHYKKQQLRELALLNGTLREESPSMSPSMSPSMSPFNTAGMKRAKTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09660			RNA-binding KH domain-containi...		Potri.004G225900 [exp]	0	1
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	3.87	0.7177
AT5G16040			Regulator of chromosome conden...		Potri.017G113200 [exp]	4.47	0.6984
AT1G69330			RING/U-box superfamily protein...		Potri.010G161100 [exp]	6.00	0.6992
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	6.32	0.6651
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	6.63	0.7122
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.018G016900 [exp]	10.95	0.6733
AT4G13530			unknown protein		Potri.013G099200 [exp]	12.00	0.6832
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.017G037000 [exp]	12.40	0.6741	MYB174
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	18.97	0.6846
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.019G013100 [exp]	20.12	0.6415	Pt-GIF1.1

Compare expression of checked genes

Potri.004G225900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.