Plant FIBer expression Database

Potri.004G226100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G005400
[exp]
49 / 1e-08 AT1G09645 56 / 2e-11 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G226100.4 pacid=42795846 polypeptide=Potri.004G226100.4.p locus=Potri.004G226100 ID=Potri.004G226100.4.v4.1 annot-version=v4.1
ATGAGTGAAATCTCAGGAGGAAGCAGATCCGTACTTCTATTATTCTTCCTTTCACTTTCTCTTCTTTTCATTTCAGGTATCTCAGATGACTCATCCGGTG
CAAAAAATGGGACGAAGGCCGATCCGCATGCTGCTTCCAAAAACAATGATGGGCCCGAGATTGCCATTGTGTTTGTTTTCGTTGTGGCAATAGGGTTCTT
TGCACTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAAAGGGAAGAGCAGTATGCCCGTCTTTTGAAGTTGTTCGAAGAGGATGATGAGCTTGAAGTTGAA
CTTGGCCTTCGAGATTGA
AA sequence
>Potri.004G226100.4 pacid=42795846 polypeptide=Potri.004G226100.4.p locus=Potri.004G226100 ID=Potri.004G226100.4.v4.1 annot-version=v4.1
MSEISGGSRSVLLLFFLSLSLLFISGISDDSSGAKNGTKADPHAASKNNDGPEIAIVFVFVVAIGFFALFLFKFWQKKKREEQYARLLKLFEEDDELEVE
LGLRD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G57765 unknown protein Potri.004G226100
[exp]
0 1
AT1G51650 ATP synthase epsilon chain, mi... Potri.008G008900
[exp]
1.41 0.9452
AT5G20165 unknown protein Potri.010G058300
[exp]
2.44 0.9125
AT4G32530 ATPase, F0/V0 complex, subunit... Potri.006G248700
[exp]
4.24 0.9063
AT4G35320 unknown protein Potri.004G207500
[exp]
9.48 0.8562
AT2G23090 Uncharacterised protein family... Potri.014G018400
[exp]
10.95 0.8705
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Potri.008G054500
[exp]
20.24 0.8796 Pt-ATGGT.1
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.009G067100
[exp]
25.05 0.8990
AT4G24840 unknown protein Potri.012G096100
[exp]
25.90 0.8782
AT1G09645 unknown protein Potri.003G005400
[exp]
26.15 0.8513
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.009G028200
[exp]
26.72 0.8710 Pt-ADF1.1

Potri.004G226100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.