Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11730 364 / 4e-130 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT4G17530 337 / 2e-119 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 333 / 5e-118 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 333 / 8e-118 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT5G59840 238 / 2e-80 Ras-related small GTP-binding family protein (.1) AT3G46060 238 / 3e-80 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 236 / 2e-79 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 227 / 9e-76 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 224 / 7e-75 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT4G35860 191 / 6e-62 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004000 [exp] 409 / 6e-148 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.002G138400 [exp] 337 / 1e-119 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 337 / 2e-119 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 335 / 1e-118 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 334 / 3e-118 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 327 / 1e-115 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.009G027900 [exp] 242 / 1e-81 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 239 / 2e-80 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.008G051700 [exp] 238 / 2e-80 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036442 [exp] 392 / 9e-141 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 345 / 3e-121 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10010999 [exp] 329 / 2e-116 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 327 / 1e-115 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10005890 [exp] 236 / 3e-79 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 232 / 6e-78 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10037608 [exp] 228 / 7e-77 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10007698 [exp] 217 / 5e-72 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 214 / 7e-71 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 214 / 1e-70 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.004G226600.3 pacid=42794335 polypeptide=Potri.004G226600.3.p locus=Potri.004G226600 ID=Potri.004G226600.3.v4.1 annot-version=v4.1 ATGAGCAACGAATATGATTATCTGTTCAAGCTTTTGCTAATCGGAGACTCTTCTGTTGGGAAATCCTGTCTGCTTCTCAGATTTGCTGATGACTCTTATG TAGACAGCTATATCAGTACCATTGGTGTTGATTTTAAAATCAGAACTGTGGAGCAGGATGGAAAGACAATCAAGCTGCAGATTTGGGATACAGCTGGACA GGAGCGCTTCAGGACCATAACGAGCAGTTATTATCGAGGAGCACATGGGATAATTATAGTCTATGATGTTACTGAGATGGAGAGCTTCAACAATGTCAAG CAGTGGTTGAATGAGATTGATAGATATGCAAATGATAGTGTCTGCAAGCTTTTAGTTGGGAATAAGTGTGATCTAGTTGAGAACAAGGTCGTGGACACTC AAACAGCAAAGGCGTTTGCAGATGAGCTTGGCATTCCTTTCCTAGAGACAAGCGCTAAAGACTCGATAAATGTGGAGCAGGCATTCTTAACCATGGCTGG TGAAATTAAGAAAAAAATGGGTAACCAGCCAACCGCTAGCAAGTCCACCGGAACTGTTCAGATGAAGGGGCAGCCAATCGAGCAGAAGAACAACTGCTGT GGTTAG
AA sequence Show only first row Show all	>Potri.004G226600.3 pacid=42794335 polypeptide=Potri.004G226600.3.p locus=Potri.004G226600 ID=Potri.004G226600.3.v4.1 annot-version=v4.1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVK QWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGNQPTASKSTGTVQMKGQPIEQKNNCC G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.004G226600 [exp]	0	1
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.003G062800 [exp]	1.41	0.7628
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	2.23	0.7904	Pt-CYN.1
AT5G59970			Histone superfamily protein (....		Potri.018G092666 [exp]	4.89	0.7180
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.012G137800 [exp]	6.00	0.7280	MP2.4
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	9.32	0.7376
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.002G244700 [exp]	9.48	0.7190
AT5G10980			Histone superfamily protein (....		Potri.007G014300 [exp]	17.66	0.7114
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.006G158538 [exp]	21.00	0.7172
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.005G232100 [exp]	21.07	0.6273
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G092600 [exp]	22.49	0.6690

Compare expression of checked genes

Potri.004G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.