Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09620 1647 / 0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT5G16715 59 / 2e-08 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G04350 56 / 2e-07 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT2G31170 46 / 0.0001 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT1G14610 45 / 0.0002 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003900 [exp] 2028 / 0 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 54 / 6e-07 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.012G134250 [exp] 42 / 0.0003 ND / Potri.010G122500 [exp] 44 / 0.0005 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.017G033200 [exp] 44 / 0.0005 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024704 [exp] 1787 / 0 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032320 [exp] 912 / 0 AT1G09620 882 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032321 [exp] 689 / 0 AT1G09620 648 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10025653 [exp] 606 / 0 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10015552 [exp] 54 / 5e-07 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10001953 [exp] 44 / 0.0007 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [poplar] [flax] DALR PF08264 [poplar] [flax] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0039 [poplar] [flax] HUP PF09334 [poplar] [flax] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Potri.004G226700.2 pacid=42796679 polypeptide=Potri.004G226700.2.p locus=Potri.004G226700 ID=Potri.004G226700.2.v4.1 annot-version=v4.1 ATGGCAACCGAGAGTGGAAAAAGTTTTGCAAGGAGGGACCGTCTGTTGGAGATAGAGAAGAAGGTCAGCGGCTGGTGGGATGAGAAAGATGTTTTCCGGG CTGAACCTGGTGAAGGGACTCCTAAACCAGGCGAGAAGTTCTTTGGCAACTTCCCATTTCCGTATATGAATGGGTTCTTGCATCTTGGACATGCATTCTC ACTTTCCAAGCTTGAATTTGCTGCTGCTTTTCACAGATTGAATGGGGCTAACGTGCTCCTTCCTTTTGGCTTTCACTGCACCGGTATGCCTATTAAGGCC TCAGCAGATAAGCTTGCAAGGGAGATCCAAAAGTTCGGCAATCCACCTGTGTTCCCTAAAGAGGTAGAGTCAGTAGAATTGCAACCAGAGCCTGAGGATG CAAATGCTGGTCAACCACCAGATAAGTTCAAGGGAAAAAAGTCTAAGGCTGTGGCAAAATCAGGTGGACAGATGTTCCAATGGGAGATTATGCGCAGTGT TGGGCTGTCCGACAGTGAGATAGCAGAGTTCCAGAAACCAGAAAAATGGTTGACTTACTTTCCACCACTGGCCATGGAAGATCTGAAGGATTTTGGCTTG GGATGTGATTGGAGAAGATCGTTTATTACAACAGATATGAATCCATATTTTGATTCTTTTGTGCAGTGGCAGATGAGGAAGTTGAAGGACATGGGGAAGA TTGTCAAAGATAAAAGATACACTGTATACTCTCCCTTGGATGACCAGCCATGCGCAGATCATGACAGGGCAAGTGGTGAAGGTGTGCAGCCCCAAGATTA CACTCTTATAAAGATGGAAGTGATGCCTCCTTTCCCGCCTAAATTCAAAGCATTAGAGGGAAGAAACGTGTTTCTAGCTGCTGCTACATTGAGGCCCGAG ACAATGTATGGACAAACAAATGCATGGGTACTGCCTGAGGGCAAGTATGGAGCTTTTGAAGTGAATGATACCGATGTCTTCATCCTGACAGAGAGAGCTG CCCTTAACCTCGCCTATCAAGGCTTCTCAAAGACCCCCAAGCAACCTAGTTGCCTGGTTGAGCTGACTGGTTATGATCTGATTGGTCTACCATTGAAGTC TCCACTTTCCTTCAACAAGGTCATTTATGCGCTTCCCATGTTGACCATTCTGACAGACAAAGGTACAGGGATCGTGACCAGTGTGCCTAGCGATGCCCCT GATGATTACATGGCATTGCAGGTTTTGAAAGCGAAACCAGCTTTCAGGGAAAAGTATGGCGTGAAGGATGAGTGGGTAGTGCCTTTTGATATTATACCCA TAATCAATATTCCAGAATATGGTGATAAGGCTGCTGAAAAGGTTTGCATGGACCTGAAAATTAAGAGCCAAAATGAGAAAGAGAAGCTTGCTGAAGCTAA GAGGTTGACATACTTGAAAGGATTTACTGATGGAACCATGCTTGTTGGAGAATGTGCAGGGAGGAAAGTCCAAGAAGCAAAGTTATTGATAAGGACCAAG CTCATTGAGACAGGTGAGGCAGTTATGTATAGCGAGCCTGAGAAGCGTGTCATGTCAAGGTCTGGTGATGAATGTGTTGTGGCTCTAACAGACCAATGGT ACCTCACATATGATGATCTTGAATGGAAGAAATTGGCTGAGGAGTGCTTATCCCAGATGAATCTCTACACTGATGAGACAAAACATGGCTTTGAGCATAC TTTGGGCTGGCTAAATCGGTGGGCTTGCTCACGATCTTTCGGGCTTGGTACGCGCATTCCATGGGATCCAGATTTTCTTGTTGAGTCATTATCTGACTCC ACTATTTACATGGCTTATTACACTGTTGCCCACTTTCTACATAATGAGGACATGTATGGTTCTAACAAGACCCATCCTATTAGACCTGAGGAAATGACTG ACGATGTCTGGAATTTTATCTTCTGTGATGGTTCATACCCAAAATCATCAAAAATAGAACCATCTATTCTTAATAAGATGAAACAGGAGTTTACATATTG GTACCCGTTTGATCTTCGAGTCTCTGGAAAGGACCTCATTCAGAATCATCTGACATTCTGCATCTTCAACCACACAGCAATCATGGCCAAGCATCACTGG CCACGCGGATTCAGATGTAATGGACACATTATGCTCAATTCAGAGAAGATGTCTAAGTCCACAGGAAATTTCAGGACACTGCGTCAGGCCATTGAGGAAT TTTCTGCTGATGCTACTCGGTTCAGTCTAGCTGATGCTGGAGATGGTGTGGATGATGCTAACTTTGTATTTGAGACTGCAAATTCTGCAATCCTTCGCCT CACTAAAGAGATTGCATGGATTGAAGAGGTTTTAGCTGCAGAGGTATCCTTGAGAACAGGACCACCATCTACTTATGCTGATCGGGTGTTTGAAAATGAA ATAAACATTGCTGTTTTAACGACAAAGAAGAATTATGAAAAATGCATGTTTAGAGAGGCTCTAAAGACTGGATGCTATGATCTCCAAGCTGCCAGAGATG AGTACAGGTTATCTTGTGGAAGTGGGGGCATGAATCGTGACTTGGTATGGCGTTATATTGATGTGCAGACACGGCTTATCACTCCTATCTGCCCACACTA TGCTGAACATGTTTGGAGGGAGCTTCTGAGGAAGGATGGATTAGTTGTGAATGCTGGCTGGCCTACAGCTGATTTTCCGGATGAAACTCTTAAGGCTTCC AACAAGTACTTGCAAGATTCAATTGTTTTGATGAGGAAACTTCTTCAAAAGCAAATCATGGGTTCAAAGAAATCCAATAAGAAGGGAGCTCCTGCTGCAA CACTAACTGAAGAGAAGATTACAGGTTTGATATATGTGAATGAGCAGTTTGATGGATGGAAAGCAGAATGCTTGAATATACTTCAGAGCAAATTTGACAG AAACACAGGTACTTTTGCACCAGAAGGGGAGATATTAGAGGCACTGCAAAAAAGTTCGGTTGGTCAAGATGCAAACTTTAAGAAAGTGCAAAAGCTTTGT ATGCCTTTCTTGAGGTTCAAAAAGGAAGAGGCTATTGCTATTGGGGTTCAAGCCTTGAATCTGAAGCTTCCGTTCGGTGAGATTGAGGTTCTTCAGGAGA ACTCAGACTTGATCAAGAGGCAAATTGGTCTGGAGTTGGTGGAAATATTGTCTGCAAATGACCATGATGCTAGAGCCAAAGCTGGTAGTTTTTCCTCTCT GTTGGATCAAAATCCTCCTTCTCCTGGACAGCCAACTGCCATCTTTTTGTTGAGCAACAGGTAG
AA sequence Show only first row Show all	>Potri.004G226700.2 pacid=42796679 polypeptide=Potri.004G226700.2.p locus=Potri.004G226700 ID=Potri.004G226700.2.v4.1 annot-version=v4.1 MATESGKSFARRDRLLEIEKKVSGWWDEKDVFRAEPGEGTPKPGEKFFGNFPFPYMNGFLHLGHAFSLSKLEFAAAFHRLNGANVLLPFGFHCTGMPIKA SADKLAREIQKFGNPPVFPKEVESVELQPEPEDANAGQPPDKFKGKKSKAVAKSGGQMFQWEIMRSVGLSDSEIAEFQKPEKWLTYFPPLAMEDLKDFGL GCDWRRSFITTDMNPYFDSFVQWQMRKLKDMGKIVKDKRYTVYSPLDDQPCADHDRASGEGVQPQDYTLIKMEVMPPFPPKFKALEGRNVFLAAATLRPE TMYGQTNAWVLPEGKYGAFEVNDTDVFILTERAALNLAYQGFSKTPKQPSCLVELTGYDLIGLPLKSPLSFNKVIYALPMLTILTDKGTGIVTSVPSDAP DDYMALQVLKAKPAFREKYGVKDEWVVPFDIIPIINIPEYGDKAAEKVCMDLKIKSQNEKEKLAEAKRLTYLKGFTDGTMLVGECAGRKVQEAKLLIRTK LIETGEAVMYSEPEKRVMSRSGDECVVALTDQWYLTYDDLEWKKLAEECLSQMNLYTDETKHGFEHTLGWLNRWACSRSFGLGTRIPWDPDFLVESLSDS TIYMAYYTVAHFLHNEDMYGSNKTHPIRPEEMTDDVWNFIFCDGSYPKSSKIEPSILNKMKQEFTYWYPFDLRVSGKDLIQNHLTFCIFNHTAIMAKHHW PRGFRCNGHIMLNSEKMSKSTGNFRTLRQAIEEFSADATRFSLADAGDGVDDANFVFETANSAILRLTKEIAWIEEVLAAEVSLRTGPPSTYADRVFENE INIAVLTTKKNYEKCMFREALKTGCYDLQAARDEYRLSCGSGGMNRDLVWRYIDVQTRLITPICPHYAEHVWRELLRKDGLVVNAGWPTADFPDETLKAS NKYLQDSIVLMRKLLQKQIMGSKKSNKKGAPAATLTEEKITGLIYVNEQFDGWKAECLNILQSKFDRNTGTFAPEGEILEALQKSSVGQDANFKKVQKLC MPFLRFKKEEAIAIGVQALNLKLPFGEIEVLQENSDLIKRQIGLELVEILSANDHDARAKAGSFSSLLDQNPPSPGQPTAIFLLSNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	0	1
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Potri.003G180100 [exp]	1.00	0.8709	PRE.1
AT4G29490			Metallopeptidase M24 family pr...		Potri.006G149500 [exp]	3.46	0.8419
AT1G14850		NUP155	nucleoporin 155 (.1)		Potri.008G134800 [exp]	3.46	0.8682
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	3.87	0.8385
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	5.29	0.8707
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	6.63	0.8260
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Potri.009G156400 [exp]	8.66	0.8169
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	9.74	0.8638
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	11.48	0.8631
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	13.63	0.8109

Compare expression of checked genes

Potri.004G226700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.