Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09600 731 / 0 Protein kinase superfamily protein (.1) AT1G57700 713 / 0 Protein kinase superfamily protein (.1) AT1G53050 671 / 0 Protein kinase superfamily protein (.1) AT1G71530 598 / 0 Protein kinase superfamily protein (.1.2) AT1G54610 567 / 0 Protein kinase superfamily protein (.1.2.3) AT1G33770 556 / 0 Protein kinase superfamily protein (.1) AT5G50860 552 / 0 Protein kinase superfamily protein (.1) AT1G03740 548 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 530 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 511 / 7e-173 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003700 [exp] 1174 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 699 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 687 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 640 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 608 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G204400 [exp] 606 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 604 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 593 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 577 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008925 [exp] 673 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 672 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 669 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 651 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 604 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000170 [exp] 593 / 0 AT1G09600 570 / 0.0 Protein kinase superfamily protein (.1) Lus10033975 [exp] 591 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 585 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 584 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 548 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G226900.2 pacid=42795767 polypeptide=Potri.004G226900.2.p locus=Potri.004G226900 ID=Potri.004G226900.2.v4.1 annot-version=v4.1 ATGGGATGCATTTGCTCGAAAGGCGGTCGAGCAAATAATTTTTTAGACAATAATGTGAGAAGAAAAGAAAAAAACAAGCCTGCCAAACGGCTAGTCTCTT TATCCAGAAAAGATGAAGTCGTGGTAGAGGTTGATGGCAGTGCTAATGATGCCACAGCTAGCTTGATATCGAATCAACCTGGAAACGATAACGTGGAGTA TGCTCCAGTATCATCCGATGAGGGGGAAAAGAAGGAAATAATCGAAAAGGCTAATAATCGAATGAGTTCTAGTATAGTGAGTATGAGCAATGGAGAGAGA GGAGCACAGGTTGTTGCTGGTTGGCCTTCTTGGCTCACTGCTGTAGCTGGAGAAGCAATCAATGGATGGGTGCCTCGAAGGGCAGATTCATTTGAGAAGC TGGATAAGATTGGACAGGGAACATATAGCAGTGTGTACAAAGCTCGGGATCTTGAAACAAATAAGATAGTGGCATTGAAGAAGGTGCGCTTTGCTAATAT GGATCCAGAAAGTGTTCGCTTTATGGCAAGAGAAATCATTGTTTTGCGCAGGCTTGATCACCCAAATGTTATGAAGCTTGAGGGTGTCATTGCTTCAAGA ATGTCTGGCAGTTTATACCTTGTATTTGAATATATGGAGCATGACCTTGCAGGGCTTTTGGCCTCACCAGGGATTAAATTCACCGAAGCACAGATTAAAT GTTACATGCAGCAGCTGCTTCATGGACTTGAACATTGCCACAACCGTGGGGTATTGCACCGTGATATAAAGGGATCAAATCTTCTGATTGACACTAATGG CAATCTCAAGATTGCTGATTTTGGACTGGCAACTTTTTTCTCTTCACCTCAGAAGCAGCCTCTAACAAGTCGGGTAGTTACATTGTGGTACAGACCTCCA GAGCTTTTGCTTGGTGCCACAGACTATGGAGTTGCTGTGGATCTATGGAGCGCTGGTTGCATTCTTGCAGAATTGTTTGCTGGGAAGCCTATCATGCCTG GAAGAACTGAGGTGGAGCAACTGCACAAAATCTTCAAACTTTGTGGGTCTCCTTCTGATGAGTACTGGAAGAGATCAAAACTGCCACATGCAACCATTTT CAAACCTCAGCATCCTTATAAACGTTGTGTTGCTGAGACATATAAGGACTTTCCGTCATCAGCTTTGTCCCTGCTTGATGTCCTTCTTGCAGTAGAACCT GAGCCCCGTGGTACTGCTTTTTCAGCACTTGATAGTGAGTTCTTCAAGATGAAGCCTCTTCCTTGTGATCCATCAAGTTTGCCCAAGTACCCACCAACCA AGGAGTTTGATGTAAAGTTTCGGGATGAGGATGCTAGAAGGCGGAGAGCAGTTGGAGGTAAAGGACGTGGACATGAATCAACTAGAAGGAGTTCGAAAGA AAGTAAAGCTGTGCCAGCACCAGATGCCAATGCAGAGTTGCAGGCATCCATACAGAAGCGACAAGGGCAGTCTAACCAAATAAGCATCAGTGAACAGTAC AATCATGAAGAAGATGGTGGTTCTGGCTATCCTATTGGTCCTGCCAAAGGAACAACAAGAAATGTCTACTCTCATTCTGGCCAGTCAATGCATCCTACAA ACTTTGGATCTTCACGTAATATGAATATCAATGATGCTGCTCTTAGGGCTCCTAGCCAAGACTTTATTTCTCCAAGGCAGACTGCAGAGTTGAGCGCTCA GAGATCTTTTGTTCAACGGGAAGCAGTCCTGTCTAGATTTTCTAATTCAGTTGCAGTTAGAGGCGATTCACACTTTCAAGGTTGCAGTTCAACTAACATG AATTCGCACTGGCCAGAGGAGAGTTTTAATGTTAGATACAACAATCTGGACGATTCCTCCCACAGTCTATTAGGCGGGCCAAATTTCTCGCATAAGAAGC CTGGTTTGGAGTCTACAATGGGTTATTCTGCAAAGAAAGGACGTGTTCATTACTCTGGACCATTGGTGCCTCAAGGTGGAAACATTGAGGAAATGCTCAA AGAGCACGAGAGACAAATCCAGCGAGCTATGCGTAAAGCTTGTTTGGAAAAGAACAACAATGAAAGTGGACAGTCTCAATCACTACTTTATCATCAGAGA ATAAATGGTCAATGA
AA sequence Show only first row Show all	>Potri.004G226900.2 pacid=42795767 polypeptide=Potri.004G226900.2.p locus=Potri.004G226900 ID=Potri.004G226900.2.v4.1 annot-version=v4.1 MGCICSKGGRANNFLDNNVRRKEKNKPAKRLVSLSRKDEVVVEVDGSANDATASLISNQPGNDNVEYAPVSSDEGEKKEIIEKANNRMSSSIVSMSNGER GAQVVAGWPSWLTAVAGEAINGWVPRRADSFEKLDKIGQGTYSSVYKARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRLDHPNVMKLEGVIASR MSGSLYLVFEYMEHDLAGLLASPGIKFTEAQIKCYMQQLLHGLEHCHNRGVLHRDIKGSNLLIDTNGNLKIADFGLATFFSSPQKQPLTSRVVTLWYRPP ELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKRSKLPHATIFKPQHPYKRCVAETYKDFPSSALSLLDVLLAVEP EPRGTAFSALDSEFFKMKPLPCDPSSLPKYPPTKEFDVKFRDEDARRRRAVGGKGRGHESTRRSSKESKAVPAPDANAELQASIQKRQGQSNQISISEQY NHEEDGGSGYPIGPAKGTTRNVYSHSGQSMHPTNFGSSRNMNINDAALRAPSQDFISPRQTAELSAQRSFVQREAVLSRFSNSVAVRGDSHFQGCSSTNM NSHWPEESFNVRYNNLDDSSHSLLGGPNFSHKKPGLESTMGYSAKKGRVHYSGPLVPQGGNIEEMLKEHERQIQRAMRKACLEKNNNESGQSQSLLYHQR INGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09600			Protein kinase superfamily pro...		Potri.004G226900 [exp]	0	1
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	3.46	0.8035
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	5.47	0.7857
AT5G42710			unknown protein		Potri.002G261700 [exp]	7.34	0.8179
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.015G106000 [exp]	10.00	0.7881	AML1.8
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	10.95	0.7753
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	14.96	0.7810
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	16.91	0.7671
AT5G42710			unknown protein		Potri.014G185300 [exp]	21.63	0.7976
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	23.47	0.7294
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	24.37	0.7718

Compare expression of checked genes

Potri.004G226900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.