Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57680 306 / 1e-101 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003500 [exp] 557 / 0 AT1G57680 284 / 4e-93 unknown protein Potri.012G023500 [exp] 106 / 7e-26 AT1G57680 111 / 6e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008924 [exp] 482 / 3e-170 AT1G57680 369 / 3e-126 unknown protein Lus10028891 [exp] 130 / 6e-35 AT1G57680 93 / 8e-22 unknown protein Lus10008842 [exp] 84 / 1e-17 AT1G57680 82 / 4e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G227000.2 pacid=42794121 polypeptide=Potri.004G227000.2.p locus=Potri.004G227000 ID=Potri.004G227000.2.v4.1 annot-version=v4.1 ATGCCCCTGACGAGTGCTGCTGCCGATGCATTGGGTGCGGTGACAATTTGTCTAGTCGCTATTTTGATTCTTTTTGGTCTGGTGTGCATTGCTTACTCAT TTTACTTCCGCTCTCGTGTTCGTAGTCAAGGCTTTTCTCAACTCAGCTATTTTAGTGGTCCCTGGATCATCCGAATAACAATCATCTTGTTTGTAATCTG GTGGGGTGTTGGTGAAATTTTACGGTTAAGTTTGTTGAGACACAAGGGTAGAGTGTTGGATGTCCTTGACTACAAATGGCAGGAAACTGTCTGCAAATGC TACATTGTCTCGAATTTGGGTTTTGCAGAACCTTGCTTGTTACTCACCATCATATTTCTTCTTCGGGCGCCCTTGCAGAAGATGGGATCGGGAGCTCTTT GTCGCGGGTGGAATGGGAAAACCGCACTATGTGTCCTTCTTTATTGCCTTCCAATGTTTGTCCTTCAGCTTGCTATTATTCTAATTGGGCCGCAACTACG GAGTAGATTGAAAAGGTTGCCTCATTATTTTACAATCACTGCAACTCATGGGATGCATAATGCTACCTCCGATATTGCGCTTTGCACTTACCCTTTATTG AATACAATCCTTCTTGGGGTTTTTGCTTCTGCACTAACTGTCTACCTGTTTTGGCTTGGAAGGCGGATTTTGAAATTGGTCATCAATAAGGGTTTGCAAA AGAGAGTATACACGTTAATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTCTTTTACTTGGACTATCTGTTTTATCTAAACCAGAGCATTTTCTATT TGAAGCTCTTGCTTTCTCAGCCTTTCTTGCCCTTTCATGCTGTGCTGGGGTGTGTATCTGCATGCTTGTTTACTATCCAGTTGCTGATTCTTTAGCGCTG GGGGATCTTCGAGACTTGGAGGCTAGAAGATATGCCGCCGATGAAACCATTTCCCTGGTTGCAAACCAAAGCCATCTTGAAGAAAGTGGTATGAGCCCAG GCAGAAACTCTGACGCCTCAACCAAGCGCGGATCAATTTCTTTCCGGACTTACCAAAGAGATGGCACTTCTTCAGGGCCATTTGTGGAACTGAGCCTTTT TTCACCAAGTCCAGATGCCACTCCGCCAGAGTCACCTCCGCCTCTCGGCTGGCCTATGCGCCCGCTTGTGGACCCAAAAACTGGGCAAGGAACTGAGTTC TCGCAGTGA
AA sequence Show only first row Show all	>Potri.004G227000.2 pacid=42794121 polypeptide=Potri.004G227000.2.p locus=Potri.004G227000 ID=Potri.004G227000.2.v4.1 annot-version=v4.1 MPLTSAAADALGAVTICLVAILILFGLVCIAYSFYFRSRVRSQGFSQLSYFSGPWIIRITIILFVIWWGVGEILRLSLLRHKGRVLDVLDYKWQETVCKC YIVSNLGFAEPCLLLTIIFLLRAPLQKMGSGALCRGWNGKTALCVLLYCLPMFVLQLAIILIGPQLRSRLKRLPHYFTITATHGMHNATSDIALCTYPLL NTILLGVFASALTVYLFWLGRRILKLVINKGLQKRVYTLIFSVSSFLPLRVLLLGLSVLSKPEHFLFEALAFSAFLALSCCAGVCICMLVYYPVADSLAL GDLRDLEARRYAADETISLVANQSHLEESGMSPGRNSDASTKRGSISFRTYQRDGTSSGPFVELSLFSPSPDATPPESPPPLGWPMRPLVDPKTGQGTEF SQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57680			unknown protein		Potri.004G227000 [exp]	0	1
AT1G57680			unknown protein		Potri.003G003500 [exp]	4.24	0.6669
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	7.74	0.6128
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	14.69	0.6058
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.014G135540 [exp]	26.22	0.5706
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	33.91	0.5237	Pt-VAP27.5
AT5G08040		TOM5	mitochondrial import receptor ...		Potri.015G058500 [exp]	34.64	0.6024
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Potri.006G243400 [exp]	39.00	0.5564
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	61.02	0.5562
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	74.40	0.5103
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	81.97	0.4919	SAMDC.2

Compare expression of checked genes

Potri.004G227000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.