Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1284 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 1072 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 1021 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 870 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003400 [exp] 1597 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 1238 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 877 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023340 [exp] 1231 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 1203 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 1152 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 1127 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 858 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 0 / 1 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF04685 [poplar] [flax] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [poplar] [flax] Gal_mutarotase PF12215 [poplar] [flax] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Potri.004G227200.2 pacid=42795539 polypeptide=Potri.004G227200.2.p locus=Potri.004G227200 ID=Potri.004G227200.2.v4.1 annot-version=v4.1 ATGCTCTTCTTCTATCTTGATGCAGTTCCAGATCTTCCAAGAAAGATGACGGAAAGAAAGATATCAAGGAATGGTTCCGATGAAGAACAAGGAGAACCTT CAAATTCTCCGGCGGATAAGATTAAGGTTGATCCTGGCAAACCTGCACCACTGACTTGGCAGCGGAGATTAGACACCAGTGAAACTGTCCTTTCACAGTT CACTTTAACTTGGCAAGAGATACTTCGTATGGCCCCTATAGGTATTCGGCTATGGCGTTATGTCAGAGAAAATGCCAAAAAAAAGAAGGGTATTTTTATC GATCCATTTGCAAAGCGCAATGTTACATCTTCTCATGGCATTCCAGTAGGTGGTGTTGGCTCAGGAAGCATTGGAAGGAGTTACAGAGGTGAATTTCAGC GTTGGCAACTGTTTCCCAGAGTAGAAGAAAAACCTGTTTTAGCAAATCAATTTTCTATTTTTGTTTCCCGCTCAAATGGTAAAAAATACTGTAGCGTACT GTGCTCAAGGAGTCCAGACAAGCTTGAAGAACCTGCAGGTTCAGGGATTGAATCTTGGGAATGGAATCTGAAGGGAGATAATTCCAGATATCATGCTTTA TACCCCAGGGCTTGGACTGTATACGAGGGCGAACCTGATCCAGAACTCAGGGTTGTTTGTCGTCAAATTTCACCTGTTATTCCTCATAATTACAAGGAGA GCAGCTTTCCTGTCTCAGTTTTTACCTTCACGCTCTATAATTCTGGAGAGACTGCAGCTGATGTCACCTTGCTTTTCACATGGGCAAATTCTGTTGGAGG GGTTTCTGAATTTTCTGGCCAGCACCTCAATTCAACAAAAATGATGGACGATGGTGTGGATTGTGTACTTCTACATCACAAGACAGCAAACGAGCTTCCC CCATTGACATTTGCAATCGCTGCACAAGAGACTCCCGGTGTCCATGTCTCAAAATGCCCTTCCTTTGTGATATCTGGAAATTCGCAAGGTCTTACGGCAA AAGAGATGTGGAATGAAGTAAAAGAGCATGGATCCTTCGACAACCTCAACTCATCTGGAAAGCCAGTGCCTTCAGAACCAGGATCATCTATTGGGGCAGC CATTGCAGCTACTTCAACAGTTCCACCAGATTCTGTGTGTACAGTTACTTTTTCATTGGCATGGGACTGTCCTGAAGTAATCTTTGCGAGTGGAAGGACT TATCACAGGCGTTACACCAAATTCTATGGTACTCATGGAGATGCTGCTGCAAATATTGCGCATGATGCTATTCTCGGACATGGCCATTGGGACTCCCAGA TAGAAGCCTGGCAGAGACCAATTCTTGAAGACAAGAGGCTTCCTGAATGGTATCCTGTCACTCTCTTTAATGAGCTCTATTATCTTAATTCAGGGGGAAC AATTTGGACAGATGGATCTCCTCCGTTGCATAGTTTAGCAACTGTTGGAGGAAAAAAGTTCTCTCTCGATAGGACAGGTTCTGATTTAGGCCACCAAGGC GATACTTCTGTTGACATTCTTGGAAGGATGACTTCTGTGCTTGAGCAAATCCACACTCCTTTAGCAACCAATTCTGCTTTAGGAACGAATTTGCTTCAAG AAGGAGAAGAAAATGTCGGCCAATTCCTTTATCTAGAAGGGATCGAGTATCCCATGTGGAACACCTATGATGTTCACTTCTATGCATCTTTCGCATTAAT TATGCTGTTTCCCAAACTTCAGCTCAGCATTCAAAGGGACTTTGCAGCCGCGGTTATGATGCATGATCCCAGTAAGATGCACCTTCTACTAGATGGACAG TGTGTCACCAGGAAGGTTCTTGGAGCCGTCCCTCATGACATTGGGATTGATGACCCATGGTTTGAAGTAAATGCCTATAACCTTCACAATACTGATCGCT GGAAAGACTTGAATCCAAAATTTGTTCTCCAGGTTTACAGAGATGTAGTTGCCACAGGAGACAAGAAGTTCGCACAAGCTGCTTGGCCATCAGTTTATGT TGCAATGGCTTATATGGATCAGTTTGATAAGGATGGTGATGGGATGATTGAGAATGATGGTTTTCCTGATCAGACATATGATACATGGTCTGTGTCTGGA GTTAGTGCATATTGTGGTGGGCTATGGGTGGCGGCCTTACAGGCTGCATCAGCCCTGGCATGGGAAGTAGGAGACAAGGATTCTGCAGAATATTTTTGGT TTAGGTTTCAGAAGGCAAAGGTTGTGTATGACAAGTTATGGAATGGTTCTTACTTCAATTATGACGACAGCAATGGTAGAAATAGCCCATCCATTCAAGC TGATCAGTTGGCCGGACAATGGTATGCACGAGCATGCGGACTTTTGCCGATTGTTGACGAGGACAAAGCACGAAGTGCATTAGAGAAGATTTATAATTAC AACTTCCTGAAGGTGCATGATGGGAAACGAGGGGCTGTAAATGGGATGCTGCCTGATGGAACAGTGGACATGTCAGATATGCAGTCGAGAGAAATATGGT CTGGGGTCACTTATGCAGTTGCCGCAACAATGATGCAGGAAGGTTTGATAGATATGGCCTTTCATACCGCAAGCGGAGTCTATGAGGCTGCGTGGGCTGA ACAAGGACTTGGGTATTCTTTTCAAACTCCAGAAGGTTGGAACACCAATGGCCAGTATAGATCTCTAGGCTACATGAGGCCTTTGGCCATCTGGGCAATG CAGTGGACTTTATCAAGTCCAAAACTTCACAAGCAGGAAATGAACTTCCAAGTCAAGCTGGAGGATTCTCTACTAGGGCACCAGCACCATGCTGGATTTG CAAAAGTTGCTCGTTTTCTCAAGTTGCCAGAAGAGGAATCATCTGTGAGTTACCTGCAGGCCTTGTTCGACTATGCTTGCAAGAAGTTTGGTTAA
AA sequence Show only first row Show all	>Potri.004G227200.2 pacid=42795539 polypeptide=Potri.004G227200.2.p locus=Potri.004G227200 ID=Potri.004G227200.2.v4.1 annot-version=v4.1 MLFFYLDAVPDLPRKMTERKISRNGSDEEQGEPSNSPADKIKVDPGKPAPLTWQRRLDTSETVLSQFTLTWQEILRMAPIGIRLWRYVRENAKKKKGIFI DPFAKRNVTSSHGIPVGGVGSGSIGRSYRGEFQRWQLFPRVEEKPVLANQFSIFVSRSNGKKYCSVLCSRSPDKLEEPAGSGIESWEWNLKGDNSRYHAL YPRAWTVYEGEPDPELRVVCRQISPVIPHNYKESSFPVSVFTFTLYNSGETAADVTLLFTWANSVGGVSEFSGQHLNSTKMMDDGVDCVLLHHKTANELP PLTFAIAAQETPGVHVSKCPSFVISGNSQGLTAKEMWNEVKEHGSFDNLNSSGKPVPSEPGSSIGAAIAATSTVPPDSVCTVTFSLAWDCPEVIFASGRT YHRRYTKFYGTHGDAAANIAHDAILGHGHWDSQIEAWQRPILEDKRLPEWYPVTLFNELYYLNSGGTIWTDGSPPLHSLATVGGKKFSLDRTGSDLGHQG DTSVDILGRMTSVLEQIHTPLATNSALGTNLLQEGEENVGQFLYLEGIEYPMWNTYDVHFYASFALIMLFPKLQLSIQRDFAAAVMMHDPSKMHLLLDGQ CVTRKVLGAVPHDIGIDDPWFEVNAYNLHNTDRWKDLNPKFVLQVYRDVVATGDKKFAQAAWPSVYVAMAYMDQFDKDGDGMIENDGFPDQTYDTWSVSG VSAYCGGLWVAALQAASALAWEVGDKDSAEYFWFRFQKAKVVYDKLWNGSYFNYDDSNGRNSPSIQADQLAGQWYARACGLLPIVDEDKARSALEKIYNY NFLKVHDGKRGAVNGMLPDGTVDMSDMQSREIWSGVTYAVAATMMQEGLIDMAFHTASGVYEAAWAEQGLGYSFQTPEGWNTNGQYRSLGYMRPLAIWAM QWTLSSPKLHKQEMNFQVKLEDSLLGHQHHAGFAKVARFLKLPEEESSVSYLQALFDYACKKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.004G227200 [exp]	0	1
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	2.44	0.8404
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.007G126400 [exp]	3.87	0.7913	BIO2.1
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	5.65	0.8300
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	6.00	0.8219
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	8.66	0.7767
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	9.79	0.7715
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	11.83	0.8071	AHA10.1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	15.58	0.7827
					Potri.007G145550 [exp]	21.21	0.7282
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	23.91	0.7797

Compare expression of checked genes

Potri.004G227200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.