Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21192 137 / 2e-44 Cytochrome c oxidase biogenesis protein Cmc1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019246 [exp] 145 / 2e-47 AT4G21192 140 / 3e-45 Cytochrome c oxidase biogenesis protein Cmc1-like (.1.2) Lus10011579 [exp] 116 / 8e-32 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [poplar] [flax] CHCH PF08583 [poplar] [flax] Cmc1 Cytochrome c oxidase biogenesis protein Cmc1 like
Representative CDS sequence Show only first row Show all	>Potri.004G227500.1 pacid=42794265 polypeptide=Potri.004G227500.1.p locus=Potri.004G227500 ID=Potri.004G227500.1.v4.1 annot-version=v4.1 ATGCATCCTCCTTTGACATTACATAGGCACCCGATGTGTGTTGAAATTATTGAGCAGTTTCAAAAGTGTCATTTGGACCATCCTATTGCTAAGTTCTTTG GTGAATGCACAGAACTCAAAATAAAACTTGATCGCTGTTTTCGGGAGGAAAAAGCCGTGAAGCGTAAGGCGAATTTTGAACAAAGCAAGAAACTTAAGGA AAGGCTTCAAGCATTAAGGAAGGAAGCTGCTGAGGGAAGTCCTGAGAAGAGCAACTTTGTGTAA
AA sequence Show only first row Show all	>Potri.004G227500.1 pacid=42794265 polypeptide=Potri.004G227500.1.p locus=Potri.004G227500 ID=Potri.004G227500.1.v4.1 annot-version=v4.1 MHPPLTLHRHPMCVEIIEQFQKCHLDHPIAKFFGECTELKIKLDRCFREEKAVKRKANFEQSKKLKERLQALRKEAAEGSPEKSNFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21192			Cytochrome c oxidase biogenesi...		Potri.004G227500 [exp]	0	1
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	1.73	0.8262
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.001G057500 [exp]	4.00	0.8441
AT4G13720			Inosine triphosphate pyrophosp...		Potri.001G052400 [exp]	7.74	0.7876
AT4G08230			glycine-rich protein (.1.2)		Potri.002G086600 [exp]	9.00	0.7894
AT5G01350			unknown protein		Potri.016G118800 [exp]	10.19	0.7579
AT1G77370			Glutaredoxin family protein (....		Potri.007G017300 [exp]	12.24	0.7753	PtrcGrx_C3
AT5G02780		GSTL1	glutathione transferase lambda...		Potri.010G214800 [exp]	14.49	0.7998
AT3G08990			Yippee family putative zinc-bi...		Potri.006G015500 [exp]	20.97	0.7354
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	23.23	0.7706
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	23.45	0.7598

Compare expression of checked genes

Potri.004G227500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.