Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10240 1199 / 0 FAR1_related FRS11 FAR1-related sequence 11 (.1) AT5G28530 521 / 4e-177 FAR1_related FRS10 FAR1-related sequence 10 (.1) AT4G38180 282 / 2e-84 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G15090 251 / 1e-72 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT2G27110 222 / 4e-62 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G76320 216 / 1e-60 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G22170 204 / 6e-56 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT3G06250 197 / 9e-54 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G52520 194 / 7e-53 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT4G19990 187 / 3e-50 FAR1_related FRS1 FAR1-related sequence 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G199300 [exp] 852 / 0 AT1G10240 825 / 0.0 FAR1-related sequence 11 (.1) Potri.T171101 [exp] 811 / 0 AT1G10240 789 / 0.0 FAR1-related sequence 11 (.1) Potri.008G108800 [exp] 811 / 0 AT1G10240 788 / 0.0 FAR1-related sequence 11 (.1) Potri.014G167000 [exp] 550 / 0 AT5G28530 966 / 0.0 FAR1-related sequence 10 (.1) Potri.016G007300 [exp] 534 / 0 AT5G28530 819 / 0.0 FAR1-related sequence 10 (.1) Potri.004G209000 [exp] 286 / 8e-86 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 283 / 2e-84 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 279 / 3e-83 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 271 / 2e-80 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 180 / 6e-49 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026854 [exp] 45 / 0.0001 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.004G227600.2 pacid=42793841 polypeptide=Potri.004G227600.2.p locus=Potri.004G227600 ID=Potri.004G227600.2.v4.1 annot-version=v4.1 ATGATGTCTGAAGAGGCTGGCCAAATGTTGGTTGTTTATGATGATCCATCTGACCAGCGATCTTTGTCGTTGGATGATACAAGCAGCGCAGAGGAATCGC CTGATGAAACCAGACTATCACTAGAAACACCTAATGATGCAATTCCATATATTGGACAAAGATTTGCTACTCATGATGAAGGCTATGAATTTTACAGTGA ATTTGCAAAAAGATGTGGATTCTCAATCCGTCGTCACCGCACAGAAGGCAAAGATGGGGTTGGAAAAGGGCTAACAAGACGTTATTTTGTCTGCCACCGT GCTGGAAACACCCCTGTCAAAACCTCAAACGAAAATAAACCTCAAAGGAATAGAAAATCGTCTCGATGTGGGTGTCAAGCATACATGAGGATTAGCAAGG TCACAGAGTTAGGAGCACCAGAATGGCGTGTCACAGGTTTTGATAATCACCATAATCATGAACTTCTAGAACCGAATCAAGTTCGGTTCCTTCCTGCATA TCGGACCATATCAGATACGGACAAGAGCAGAATCCTCATGTTTGCCAAAACAGGAATTTCAGTGCAGCAAATGATGAGACTCATGGAGCTTGAAAAATGT GTAGAGCCAGGATATTTGCCCTTCACTGAAAAGGATGTGAGGAACTTGCTTCAGTCATTTAGAAAACTGGACCCAGAGGATGAGAGCGTAGACTTATTAA GAATGTGCAGAAATATAAAGGAGAAGGACCCCAACTTTAAATTTGAATACACACTCGATTCTGACAACAGGTTAGAGAACATTGCTTGGTCATATGCGTC ATCAGTCCAATCATATGAGATCTTTGGTGATGCAGTGGTATTTGATACAACACATCGCTTAACTGCATTTGACTTGCCTCTCGGCATATGGGTTGGAATG AACAACTATGGTATGCCTTGCTTCTTCGGATGTGTGATTTCACGAGAGGAAAATTTGAGGTCGCTGTCATGGGCATTAAAGGCATTCTTAGGATTCATGA ATGGAAAGGCCCCACAAACAATATTAACTGACCAGAATATGTGCCTGAAAGACGCAATAGCTAAGGAGATGCCTTCAACGAAACATGCACTTTGCATATG GATGATTGTGGCGAAGTTTCCATCCTGGTTTAATGCTGTTTTGGGGGAACGTTATAATGAGTGGAAAGCAGAGTTCTATCGACTCTATAATTTGGAGTCA ATTGAGGACTTTGAACAGGGTTGGAGGGACATGGTCAATATTTTTGGGCTGCATACAAACAGGCACGTTGCCAACTTGCATGCCTTACGCAATCTTTGGG CTCTTCCATACTTGAGAAGCCATTTCTTCGCGGGAATGACTGCAGCTGGTCATTCAAAATCAATTAACGCTTTCATCCAAAGGTTTCTGAGTGCTCAAAC TCGGCTTGCACACTTTGTGGAACAGGTTGCTGTAGCTGTAGATTTTAAAGATCAAGCGGCTGAACAGCAAACAATGCAGCAGAATCTGCAAAACATAAGT TTAAAAACTGGGGCACCTATGGAATCCCATGCAGCCACAGTCCTTACTCCTTATGCCTTCTCGAAGCTCCAAGAACAACTTGTTTTGGCTGCCCACTACG CATCATTCCAGATGGAGGATGGTTTTCATGTGAGACACCACACCAAACGTGAGGGAGGCCGGATAGTATATTGGGTTCCTAGGGAAGGAATTATTAGTTG CAGCTGCAATCAGTTTGAGTTCTCTGGAATTCTTTGTCGACATGCCCTTCGAGTTCTTTCCACAGGAAACTGTTTTCAGATCCCAGAAAGGTACCTTCCT TTGCGTTGGCGTCGGATTAACACATCTAGTGCAAAGCTTCTTCACAGTTCCAATGATCATGGTGAAAGAATTCAGTTATTGCAGAACATGGTATCAAGTC TCATAACTGAATCTGCCAAGTCGAAGGAGAGACTGGATATTGCAACCGAGCAAGTTTCTATTCTTTTATCTCGCATCAGAGATCAACCAGTTCCATCACA AGGTATACGAGATTTTACCTCCATTCACAGAAAACTTTAG
AA sequence Show only first row Show all	>Potri.004G227600.2 pacid=42793841 polypeptide=Potri.004G227600.2.p locus=Potri.004G227600 ID=Potri.004G227600.2.v4.1 annot-version=v4.1 MMSEEAGQMLVVYDDPSDQRSLSLDDTSSAEESPDETRLSLETPNDAIPYIGQRFATHDEGYEFYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHR AGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFDNHHNHELLEPNQVRFLPAYRTISDTDKSRILMFAKTGISVQQMMRLMELEKC VEPGYLPFTEKDVRNLLQSFRKLDPEDESVDLLRMCRNIKEKDPNFKFEYTLDSDNRLENIAWSYASSVQSYEIFGDAVVFDTTHRLTAFDLPLGIWVGM NNYGMPCFFGCVISREENLRSLSWALKAFLGFMNGKAPQTILTDQNMCLKDAIAKEMPSTKHALCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLES IEDFEQGWRDMVNIFGLHTNRHVANLHALRNLWALPYLRSHFFAGMTAAGHSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQAAEQQTMQQNLQNIS LKTGAPMESHAATVLTPYAFSKLQEQLVLAAHYASFQMEDGFHVRHHTKREGGRIVYWVPREGIISCSCNQFEFSGILCRHALRVLSTGNCFQIPERYLP LRWRRINTSSAKLLHSSNDHGERIQLLQNMVSSLITESAKSKERLDIATEQVSILLSRIRDQPVPSQGIRDFTSIHRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	3.16	0.8600
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	3.74	0.8643
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	7.21	0.8295
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	11.74	0.8575
AT2G43250			unknown protein		Potri.007G124700 [exp]	12.48	0.8574
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.008G165000 [exp]	12.96	0.8221
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	17.14	0.8393
AT2G31600			unknown protein		Potri.017G035200 [exp]	19.62	0.8477
AT4G15820			unknown protein		Potri.008G222000 [exp]	20.78	0.8459
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	20.78	0.8299

Compare expression of checked genes

Potri.004G227600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.