Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10270 671 / 0 GRP23 glutamine-rich protein 23 (.1) AT3G49240 267 / 1e-77 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60980 228 / 4e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60960 222 / 7e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28380 184 / 8e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28340 185 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 142 / 7e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62590 140 / 4e-34 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 138 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 140 / 9e-34 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G002950 [exp] 1025 / 0 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.012G015400 [exp] 250 / 3e-71 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 157 / 2e-39 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 154 / 4e-38 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G045000 [exp] 140 / 2e-34 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 139 / 7e-34 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 135 / 9e-33 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 135 / 1e-32 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 134 / 3e-32 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002990 [exp] 783 / 0 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024469 [exp] 489 / 2e-155 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10018109 [exp] 266 / 4e-77 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022406 [exp] 261 / 2e-75 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024470 [exp] 179 / 8e-51 AT1G10270 209 / 3e-62 glutamine-rich protein 23 (.1) Lus10023863 [exp] 145 / 3e-35 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019524 [exp] 133 / 1e-31 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 132 / 4e-31 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 127 / 1e-29 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035577 [exp] 121 / 2e-29 AT5G12100 363 / 8e-119 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.004G227800.2 pacid=42793881 polypeptide=Potri.004G227800.2.p locus=Potri.004G227800 ID=Potri.004G227800.2.v4.1 annot-version=v4.1 ATGTCCCTCCATCTCCTCCTCCTTCGCCGCTCCTCTTCCACTCTAACAACCACCAATCATCCTCTACTACGAGCTCTCCACCACCTCATTCTCTCTCCCC TCCATCATATCCCAAACCCTAACCCTCCAATTTCCACCACCCCACTCCTGCCATCATCTCGCACATTCTCCTTTTCCTCAGCCGAAGAAGCCGCCGCAGA ACGTAGAAGAAGAAGGCGCCGACTCCGAATCGAACCTCCACTCCAAGCAATGCAACGCAACCCGAACCCTCCCCCTCGTGACCCCAACGCTCCTCGCCTC CCTGACTCCACAAGCGCATTAACTGGTAATCGCCTTAACCTCCACAATCGAGTCCAATCCCTAATCCGCGCTTTCGATCTCGACACTGCATCCCATGTTG CTCGCAATTCTGTTTATTCACGTACTCGCCCCACTGTGTTTACTTGCAACGCCATCATAGCTGCTATGTATCGCGCCAAAAGATATGACGATGCGATTGC GCTGTTCAAGTTCTTTTTTGAACAACATCATATAGTGCCTAATGTTGTTTCATATAATAATTTGATTAATGCACATTGCGATGAGGGGAGAGTTGATGTG GGGCTTGAGGTTTATAGGCGTATAATTGAGATAGCCCCGTTTTCACCGTCTTCAGTGACTTATAGGCATTTAACTAAAGGGTTGATTGATGCTGAGAGGA TGGAGGATGCGGTTGCTTTGTTGAGGGAGATGTTGGTTAAAGGGCATGGTGCGGATTCGTTGGTTTATAATAATGTGATCAAAGGGTTTTTGGAGTTGGG GAATTTGGAGAAGGCTGATGAGTTCTTCAATGAGTTGAAAGAGAGGTGTTTGGTTTATGATGGAGTGATTAATGCCACGTATATGGATTGGTGGTTTAAA CAAGGGAAGGATAAGGAGGCTATGGAAAGTTACAAGTCTTGGCAGGATAGGAATTTTAAGGTGGTACCTGCAACATGTAATACCATTTTGGAGGTTCTAG TTAAATATGGGAAGAAAGAGGCTGCATGGGCTTTGTTTGAGCATATGCTGGATAATCATACCCCACCGACCCACCAAGGTGTAAATTCAGATACATTTAA TACAATGGTGAATGAGTGCTTTAGGGAAGGGGAGTTTGAGGAGGCAATTAATACATTTAAAAAGGCAGGGACAAAGCCTGGATCTAAGCCTTTTCAAATG GATGTTGCGGGGTACAACAACATTATCGCAAGGTTTTGCGAGAATGGGATGATGAAGCAGGCGGAGGAGTTCCTTGCAGCATTATCTGCCAAATGCTTGA CTCCTGATGTCACGACTTTTAGGACATTAATCGATACATATTTGAAGATGGAGGAGATTGATGATGTTTTGAGAATGTTCAATAAAATGGCAGATGCTGG TTTGAGGGTGGTGGCAAGCTTTGGGACTAGGGTGTTTGGTGAGTTGATCAAGAATGGCAAGGCAGTGGAGTCTGCAGAGATTTTGACCAAAATGGGAAAC AAAGATCCAAAACCAGACTCCTCAATCTATGATGTTGTGGTTAGGGGGCTTTGTAATGCTGGTGCACTAGACATGGGCAAGGATATCGTCGACCAAATGA TGAAATATGGTGTTGGTGTTCCACCTGTATTGAAGGATTTTGTACTTGAGGTTTTTGAAAATGCTGGACGGGGTAGTGAGGTTAAGAGTGTTTTGGATCA AAGTAAGTGGATTAACAATTCAAGACCTGCTTATCCAAGACAGCCTCAAAGTCAACATGAACCTACTCAAATGGCAAGTGGGTGGCCATTAGGGCCTTCT CCATTGATGGGAAAATCAATTTCAGGTGAACCTCAGATTTCAAGATCACAGTCCTTTGGAGTCCATCCAATGTCAAGACAAACACAATTAGGATCTCCTC AGATGACTGGGCAGCTGCCACTAGGTTCTCATAATAGGCAACAGCCATCAGGATTCCACAATATGGATCAACAACAGCCATCAAAACCTTACCAAGAGCA ACAATCTTCATGGTCTTCTCAAGCAGGAGGCCAGCATCCACCATGGTCTCCTCAAACAGCAGGCCAACAGCTATCGTGTTCTTCTCAAACAGGAGGTCAA CAGCCGTCATCATGTTCTTCTCAAACTGGACAGCAGCTGTCACAATCTTCTCAGACAGGACAACAAAGTGGACCGCAGCTGTCACATTCATCTCAAACAG GCCAGCATCCTCCATGGTCCTCTCGAGCAGGAGGCCAGCAGCCATCATGGTCCTCTCAATCAGGAGGCCAGCAGCCATCTTGGTCCTCTCAATCAGGAGG CCAGCAGCCATCTTGGTCCCCTCAAACAAGAGGCCAGCAGCCATCTTGGTCCTCTCAAACAAGAGGACAGCAGCAATCATGGTCCTCTGATAGGGGAGGG CATCAGCCATCATGGTCCTCTGAAACTGGGGGACAGCAGGCATTAGGGTCCAGTAATATGGAACATCAGCCACCAGGAACCTCTCATATGATTAAATGCC ATCCAAATGAATCTCCACAGATGTCAGGACAGGCAACTTTTCAATCCTCACAGAATGGTGGACAATATTCCTACGGGTCACCTTCAGTGGTCAGAAACCA TCCTGTAGGATCCTCACCAGATGCACCTTTTCAATCCTCACAGAATGGTGGACAATATTCTTACGGATCACCTTCAGTGGTCAGAAACCACCCTGTAGGA TCCTCACCAAATGCACCTTTTCAATCGTCACAGAATGGTGGACAATATTCTTACGGATCACCTTCAGTGGTCAGAAACCACCCTGTAGGATCCTCACCAA ATGCACCTTTCCAATCCTCACAGAATGGTGGACAATATTCTTACGGATCACCTTCAGTGGTCAGAAACCATCCTGTAGGATCCTTACCAAATGGAGGACA ATATTCTAATGGATCACCTTCAGTGGTCAGACACCATCCTGTAGGATCCTCTCAGATGGCTGGACAACAACAAGGGGAAGACAACCAGCAGCAGCCAAAT GGACCTTCAGATATGGCTGAACAGCATTCATCGGGAGCCCTTGAATGGCAACACAGCCACCAGCAGGCAGCAGCATGA
AA sequence Show only first row Show all	>Potri.004G227800.2 pacid=42793881 polypeptide=Potri.004G227800.2.p locus=Potri.004G227800 ID=Potri.004G227800.2.v4.1 annot-version=v4.1 MSLHLLLLRRSSSTLTTTNHPLLRALHHLILSPLHHIPNPNPPISTTPLLPSSRTFSFSSAEEAAAERRRRRRRLRIEPPLQAMQRNPNPPPRDPNAPRL PDSTSALTGNRLNLHNRVQSLIRAFDLDTASHVARNSVYSRTRPTVFTCNAIIAAMYRAKRYDDAIALFKFFFEQHHIVPNVVSYNNLINAHCDEGRVDV GLEVYRRIIEIAPFSPSSVTYRHLTKGLIDAERMEDAVALLREMLVKGHGADSLVYNNVIKGFLELGNLEKADEFFNELKERCLVYDGVINATYMDWWFK QGKDKEAMESYKSWQDRNFKVVPATCNTILEVLVKYGKKEAAWALFEHMLDNHTPPTHQGVNSDTFNTMVNECFREGEFEEAINTFKKAGTKPGSKPFQM DVAGYNNIIARFCENGMMKQAEEFLAALSAKCLTPDVTTFRTLIDTYLKMEEIDDVLRMFNKMADAGLRVVASFGTRVFGELIKNGKAVESAEILTKMGN KDPKPDSSIYDVVVRGLCNAGALDMGKDIVDQMMKYGVGVPPVLKDFVLEVFENAGRGSEVKSVLDQSKWINNSRPAYPRQPQSQHEPTQMASGWPLGPS PLMGKSISGEPQISRSQSFGVHPMSRQTQLGSPQMTGQLPLGSHNRQQPSGFHNMDQQQPSKPYQEQQSSWSSQAGGQHPPWSPQTAGQQLSCSSQTGGQ QPSSCSSQTGQQLSQSSQTGQQSGPQLSHSSQTGQHPPWSSRAGGQQPSWSSQSGGQQPSWSSQSGGQQPSWSPQTRGQQPSWSSQTRGQQQSWSSDRGG HQPSWSSETGGQQALGSSNMEHQPPGTSHMIKCHPNESPQMSGQATFQSSQNGGQYSYGSPSVVRNHPVGSSPDAPFQSSQNGGQYSYGSPSVVRNHPVG SSPNAPFQSSQNGGQYSYGSPSVVRNHPVGSSPNAPFQSSQNGGQYSYGSPSVVRNHPVGSLPNGGQYSNGSPSVVRHHPVGSSQMAGQQQGEDNQQQPN GPSDMAEQHSSGALEWQHSHQQAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	1.41	0.9534
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	2.82	0.9369
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	6.63	0.9094
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.011G001100 [exp]	6.92	0.9005
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	7.14	0.9220
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	8.48	0.9087
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	9.16	0.8947
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	9.48	0.9089
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	9.89	0.9056
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	9.94	0.9017

Compare expression of checked genes

Potri.004G227800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.