Plant FIBer expression Database

Potri.004G228200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78910 648 / 0 Pseudouridine synthase family protein (.1)
AT3G19440 249 / 1e-77 Pseudouridine synthase family protein (.1)
AT1G76050 55 / 6e-08 Pseudouridine synthase family protein (.1.2)
AT3G52260 44 / 0.0002 Pseudouridine synthase family protein (.1.2.3)
AT5G51140 43 / 0.0003 Pseudouridine synthase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G095700
[exp]
286 / 1e-91 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1)
Potri.002G016800
[exp]
65 / 3e-11 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2)
Potri.015G101300
[exp]
46 / 5e-05 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033350
[exp]
666 / 0 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1)
Lus10034804
[exp]
664 / 0 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1)
Lus10002811
[exp]
273 / 2e-86 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1)
Lus10027863
[exp]
256 / 3e-80 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1)
Lus10005619
[exp]
59 / 6e-09 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2)
Lus10017250
[exp]
57 / 2e-08 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2)
Lus10022437
[exp]
52 / 5e-07 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2)
Lus10023503
[exp]
44 / 0.0002 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3)
Lus10040385
[exp]
43 / 0.0005 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence
>Potri.004G228200.1 pacid=42795090 polypeptide=Potri.004G228200.1.p locus=Potri.004G228200 ID=Potri.004G228200.1.v4.1 annot-version=v4.1
ATGTGGAGACAGAGAGTGTTAGTGTCATCTGGGGTGAGGCTGTATTCAAGAGTTGCGCCTCAAGTTGTCAGAGTGACAGCCAAGAATGTAGCCAAACTGG
GTTCTCCAAAAGAGGGGCCAAAACCTCGTCAGCTCCTGTCCTTGCCCCCGTTTCCAGGTTTTCCTTTACCTGGAAAGAAGTCTCTTAATGCTTGTCATGT
CACTGCTATCAGCTGGGTCAAATATTATTTCGATGAAATCCAAGATTCTGTCATTCAGTCTCATTTTAACAAGTCCCTTGTTCAAATAGAGTGCCCCAGT
TCTAGTGACTCTGTTGAAATGGAAGGGCTTGGAAAACCCATGAGAAAGATTAAGCCAAGTGATGTCATGGAAGTTGGGGCGAGAATTCATATTCCTGTAT
CAGTTGCTGAGACTGCAATTTCCAAGAGGTTTGATACCATACCAAGTGGAACTTTGTACCCAAATGCTGATGAGATAGAGTATTTGCAAAGGCTTGTCAA
GTACAAGGACTCTGCTCTCCTTGTGCTAAATAAGCCGCCAAAGGTTCCAGTCAAGGGAAACATGCCAATTCACAATAGCATGGATGCATTGGCAGCTGCA
GCTTTGTCTTATGGTTATGATGAGGGTCCTAAATTGGTGCACCGACTTGACAGAGAGAGCAGTGGCCTCCTCTTAATGGGTCGAACAAAAGAAAGTATAG
CTCATCTCCAGTTGTTATTTAGTTACATAAATAAAGCACGATCCAAGTGTCAGGCGTGGAATGACGCATGTGAGGCAACATATCAACGATACTGGGCATT
GGTCATAGGCTCTCCAAAGGACAAGGAAGGCTTAATTAGTGCACGTCTTTCAAAGGTGCTTCTTGATGATGGGAAGACAGAGAGAGTTGTTTTGGCCCAG
CATTCAAGTTTGGAACCGTCCCGAGACGCTGTAACTGAATATCGAGTCTTAGGTCCTACAATAAATGGATGCTCATGGATCGAATTGCGTCCACTTACTA
GTCGAAAGCATCAGCTCCGTGTCCATTGTGCGGAAGCTCTCGGAACTCCAATTGTTGGTGATTACAAGTATGGGTGGTTTGTGCACCGGAGGTGGAAGCA
AATGCCAAGAGTTGATATTGAACCATCTTCCGGGAAACCATACAAGTTGCGGTGGCCAGAAGGTGTGGATATTCAAAAGGGAAGTGTCCTGGCAAAAGTC
CCCTTATTGCATCTCCATTGCAGGGAACTCGTGCTCCCAAACATTGCAAAATTCCTTGATGTTTTGGATGGGAAATCAGAAAATGTGCATCCTGCACTTA
GCACTAGACCAGACCTTCTAAGGTTTGTGGCATCGATGCCTTCCCACATGAAAATTAGCTGGAATCTCATGTCCTCCTTCTTGGTATAA
AA sequence
>Potri.004G228200.1 pacid=42795090 polypeptide=Potri.004G228200.1.p locus=Potri.004G228200 ID=Potri.004G228200.1.v4.1 annot-version=v4.1
MWRQRVLVSSGVRLYSRVAPQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPS
SSDSVEMEGLGKPMRKIKPSDVMEVGARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVPVKGNMPIHNSMDALAAA
ALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYINKARSKCQAWNDACEATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQ
HSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKV
PLLHLHCRELVLPNIAKFLDVLDGKSENVHPALSTRPDLLRFVASMPSHMKISWNLMSSFLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78910 Pseudouridine synthase family ... Potri.004G228200
[exp]
0 1
AT1G55915 zinc ion binding (.1) Potri.008G009700
[exp]
3.00 0.7477
AT3G10160 ATDFC, FPGS2 folylpolyglutamate synthetase ... Potri.006G045400
[exp]
4.58 0.7161
AT5G20510 Alfin AL5 alfin-like 5 (.1) Potri.006G223500
[exp]
4.69 0.7457
AT1G47820 unknown protein Potri.014G121300
[exp]
16.06 0.7181
AT1G48170 unknown protein Potri.008G099700
[exp]
18.02 0.6870
AT3G24150 unknown protein Potri.018G128700
[exp]
18.54 0.7306
AT3G58610 ketol-acid reductoisomerase (.... Potri.011G052700
[exp]
19.05 0.7450
AT3G22470 Pentatricopeptide repeat (PPR)... Potri.007G068400
[exp]
21.16 0.6862
AT1G19520 NFD5 NUCLEAR FUSION DEFECTIVE 5, pe... Potri.005G228200
[exp]
22.22 0.6561
AT3G58180 ARM repeat superfamily protein... Potri.005G221700
[exp]
30.74 0.6685

Potri.004G228200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.