Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLC.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49890 983 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 753 / 0 Voltage-gated chloride channel family protein (.1) AT5G40890 651 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 645 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G26240 417 / 2e-134 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001500 [exp] 1152 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 961 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 953 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 798 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 791 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 641 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 449 / 1e-146 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007433 [exp] 1014 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 1013 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 759 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 657 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 434 / 5e-141 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 420 / 1e-135 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 173 / 3e-48 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 136 / 3e-36 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.004G228300.1 pacid=42795008 polypeptide=Potri.004G228300.1.p locus=Potri.004G228300 ID=Potri.004G228300.1.v4.1 annot-version=v4.1 ATGGAGGATTATAGTAATAGAGAAAAGAATGATTTAGAGATAGATGATGATAAGGAACACAGTGTGTCAATGTTGAGAGAGCCATTTCTTGTTAGGAATA GAAAGAACAATACTTCACAGATTGCCATTGTTGGTGCTAATACCTGCCCCATCGAAAGCCTTGATTATGAGATTGCTGAGAATGAACTTTTGAAACAGGA CTGGAGATCTCGAAAGAAGGCTGAGATATTTCAGTATGTTGTCCTCAAGTGGACACTTGCTCTCCTCATTGGGTTAGGTACAGGGCTTGTCGGCTTTTTC AATAACCTTGCCATTGAGAATATAGCTGGTTTCAAACTTCTGGTGACAAACAATCTCATGCTTAAGGAGATGTACTATCAGGCATTTGCAACTTATGCTG GTTGCAATGTGGTTTTGGCTATTGCTGCTGCAGCCTTATGTGCTTATGTTGCTCCTGCGGCAGCAGGATCTGGTATACCAGAGGTTAAAGCATACCTCAA TGGTGTAGATGCTCCTTCTATTTTGGCACCTGCTACCCTTTTTGTAAAGATATTTGGGTCCATATTTGGGGTTGCTGCTGGATTTGTTGTTGGCAAAGAA GGACCCATGGTGCATACTGGTGCTTGCATAGCCTCCTTTCTTGGACAGGGAGGTTCTCGTAAGTATCATTTGACATGGAAATGGCTGAGATACTTCAAAA ATGATCGAGACCGGCGAGATTTGATCACATGTGGTTCTGCTGCTGGTGTAGCAGCTGCCTTCCGTGCTCCTGTTGGCGGGGTCTTATTTGCCCTTGAAGA AGCTGCTTCCTGGTGGAGGAGTGCCCTTCTTTGGAGGACATTCTTCACAACAGCTGTAGTAGCAGTTGTATTGAGAAGTCTCATAGAATTTTGCCGAACT GGAAAATGTGGGCTGTTTGGACAAGGAGGTCTGATCATGTTTGATGTAAATTCGACAAAAGCTACTTACAGTACCCCAGATCTACTAGCAGTTATGTTCC TTGGAGTGATAGGAGGTGTTTTTGGAAGCTTTTACAACTATTGTGTTGACAAGGTCCTTCGCACTTACAGCATCATCAATGAGAGAGGTCCTTCGTTTAA GATCCTGCTTGTTATTGTCATTTCCCTGCTGACCTCTTGTTGCTCCTACGGCCTCCCATGGCTTTCACAGTGCATTCCCTGTCCCCCTCACCTGGCTGAG CAATGCCCCACTGAAAGTCGCTCTGGAAACTTCAAGAATTTCCAGTGTCCACCAAACCACTATAACAATCTTGCTTCCCTCTTTTTCAACACCAATGATG ATGCCATCCGCATCTTATTCACTTCTGGCAGCGAAAAAGAATTTGACCTCTCCACCCTTCTGGTTTTCTTCGTTGCTATTTTCTGCCTTGGCATTGTTAC TTATGGCATTGCTGTTCCCTCTGGGCTCTTCATCCCAGTCATTCTTGCTGGGGCCTCTTATGGCCGTCTTGTTGGAACACTGCTCGGTCCCCTTTCTAAT CTTGATGTGGGTCTCTTTGCCCTTCTTGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTCTTTGTGTCATACTTCTCGAACTGACTA ATGATCTGCTTATGCTTCCATTAATGATGCTAGTGCTCCTCATTTCAAAATCTGTGGCTGATATTTTCAATAAGGGTGTTTATGATCAAATTATGAAAAT TAAAGGATTGCCTTATATGGAAACCCATGCAGAACCATACATGAGACACCTTATTGCAAGTGATGTTGTTTCTGGTCCATTAGTTTCATTCTCTGGGGTT GAAAAGGTAGGGAACATATTACATGTCCTGAGAGTAACAAGGCATAATGGATTTCCTGTGATTGACGAGCCGCCTTATTCAGATGCTCCAGAATTATGTG GGCTTGTCTTGAGGTCTCATCTGCTCGTGTTGCTTAAAGGAAAGAAATTTACAAAGCAGAGAGTAAAGACAGGATCAGATATTGTGAGGGGTTTCAAGGC ACATGACTTTGCAAAGGCTGGATCGGGCAAAGGGGTGAAGCTGGAAGATTTGGAGATCACAGAGGAGGAGATGGAGATGTATATTGATCTCCATCCTATT GCTAACACATCTCCATACACCGTGGTTGAATCCATGTCTCTAGCTAAAGCTGCTGTTCTCTTTCGCGAACTTGGCCTTAGACACTTGTGTGTGGTGTCGA AGACGCCAGGGATGCCTCCTATTGTTGGAATCTTGACTCGGCACGACTTCACCCCGGAGCATGTACTGGGGCTTTACCCACATATTAAACCCCACAAGTA G
AA sequence Show only first row Show all	>Potri.004G228300.1 pacid=42795008 polypeptide=Potri.004G228300.1.p locus=Potri.004G228300 ID=Potri.004G228300.1.v4.1 annot-version=v4.1 MEDYSNREKNDLEIDDDKEHSVSMLREPFLVRNRKNNTSQIAIVGANTCPIESLDYEIAENELLKQDWRSRKKAEIFQYVVLKWTLALLIGLGTGLVGFF NNLAIENIAGFKLLVTNNLMLKEMYYQAFATYAGCNVVLAIAAAALCAYVAPAAAGSGIPEVKAYLNGVDAPSILAPATLFVKIFGSIFGVAAGFVVGKE GPMVHTGACIASFLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLIEFCRT GKCGLFGQGGLIMFDVNSTKATYSTPDLLAVMFLGVIGGVFGSFYNYCVDKVLRTYSIINERGPSFKILLVIVISLLTSCCSYGLPWLSQCIPCPPHLAE QCPTESRSGNFKNFQCPPNHYNNLASLFFNTNDDAIRILFTSGSEKEFDLSTLLVFFVAIFCLGIVTYGIAVPSGLFIPVILAGASYGRLVGTLLGPLSN LDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLMMLVLLISKSVADIFNKGVYDQIMKIKGLPYMETHAEPYMRHLIASDVVSGPLVSFSGV EKVGNILHVLRVTRHNGFPVIDEPPYSDAPELCGLVLRSHLLVLLKGKKFTKQRVKTGSDIVRGFKAHDFAKAGSGKGVKLEDLEITEEEMEMYIDLHPI ANTSPYTVVESMSLAKAAVLFRELGLRHLCVVSKTPGMPPIVGILTRHDFTPEHVLGLYPHIKPHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.004G228300 [exp]	0	1	CLC.4
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	6.00	0.9208
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	8.00	0.9212
AT5G53580		AtPLR1	pyridoxal reductase 1, NAD(P)-...		Potri.015G006900 [exp]	22.44	0.9091
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.005G207200 [exp]	27.74	0.9058
AT1G63610			unknown protein		Potri.005G250000 [exp]	33.63	0.8900
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.018G106400 [exp]	34.29	0.9081
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Potri.012G038200 [exp]	39.68	0.8905
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	40.00	0.8953
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	42.32	0.9066
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	46.13	0.9068	SIGF.1

Compare expression of checked genes

Potri.004G228300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.