Plant FIBer expression Database

Potri.004G228500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23390 669 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038137
[exp]
711 / 0 AT2G23390 658 / 0.0 unknown protein
Lus10010689
[exp]
695 / 0 AT2G23390 669 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF04339 FemAB_like Peptidogalycan biosysnthesis/recognition
Representative CDS sequence
>Potri.004G228500.2 pacid=42794053 polypeptide=Potri.004G228500.2.p locus=Potri.004G228500 ID=Potri.004G228500.2.v4.1 annot-version=v4.1
ATGAAGTTATTACTGATTTTTTTCTTTCTTTCTTTCTCTCTATTTTTTCCGGGTTTCAGAAAGAGAGAGAGAGCCAAGAATTTTGTGGCCATGGCAGCAG
TAGTAATGAGCTACTACTGCAAGCCTTCGCCATTTCTGGGCCACTTCCCATCTTACCTTGCAAAATCATCATCCAGACAGGTTGCGGGGACTGCAGTTCA
GGAATCTAAAATCAGTGCACTGTTTTGGGGATCGAAGAAGTCTGTGCAGCCAAAAGAATTGGATGTTTCAGTTTCACTACAAGATTCCATTCTAACAGGG
GGTGGTTTGGAAAAACAAATAACACCTAAGAGGATTTCACTTTCCATCATTTCTTCAATCTCAGAAGTTTCGTCGCATGAATGGGATGCCTGCAATTTGG
ATGCTACTGGCCCTGACAAGTTTAATCCATTTCTTAGCCATGGTTTTCTTTCAAGCTTGGAAGAGTCACGCTCGGCAGTTAAGGAGACTGGATGGATGCC
TAGCCACATTGTTGCTAAGGATGAATCTGATAATGTTTTGGGTGTTGTTCCACTCTATCTTAAAAGCCATTCCTATGGCGAATTTGTTTTTGACCATTCT
TGGGCTGATGCCTACTATGGTTTCGGATCAAGGTATTATCCAAAGTTTCAGTGTTGTGTGCCTTTCACTCCAGTAACTGGTCCAAGGATTCTGGTCCGCA
ATACCCCCTTCAGAGATCAACTTTTTGATGTTCTAGTCTCTGCCCTGAAGGATCTGGCAGCCAAGTCCCAGGTCTCATCACTGCACATCACCTTCCCCAC
TGAAAAAGAGTGGCACATGCTGAAGGAAAAGGGATTTCTGCAGAGGATTGGAATGCAGTATCACTGGAAAAATCGTAACTATAAAAATTTTGATGAATTC
TTGATGGATATGAAGCAAAGTAAAAGAAAAAATATTCGTCAAGAACGCAAAAAGGTTTCTACTCAAAACTTGAGTATGAAACGTCTTCGGGGTTATGAAA
TAAAGGCTAGGCATTGGGATACCTTCTATAGCTTCTACAGGAACACGACTGATAACAAGTGGGGTACTCCTTATCTCACGAGGGATTTTTTTCACACCAT
GGGGTCAAAGATGGGAGATCAGGTGCTGCTTGTTGTTGCTGAAGAAGGAGATGAGCTTGTTGCTGGAGCTCTTAACATTATTGGTGGAGATACTCTATTT
GGACGTCTATGGGGATGTCATCCAAAAGCCTACTATCCAAGCTTGCATTTTGAAGCATGCTATTACCAGGCAATAGAGGCGGCCATTGAACTTAACTTGA
ACACAGTAGAAGCAGGAGCTCAGGGTGAGCATAAAATTCAGCGTGGTTACCTGCCAGTGTTAACTTATAGCTGCCATTACCTCATTGATGAAGCTTTCAG
GAAAGCTATAGAGGAATTTCTAGTGCGGGAATCAACCCAGGTTAAGCTTGTTATGAAACTAATTCACGATTCCGGTCCCCTTAAGGAGGGCATAAAATAG
AA sequence
>Potri.004G228500.2 pacid=42794053 polypeptide=Potri.004G228500.2.p locus=Potri.004G228500 ID=Potri.004G228500.2.v4.1 annot-version=v4.1
MKLLLIFFFLSFSLFFPGFRKRERAKNFVAMAAVVMSYYCKPSPFLGHFPSYLAKSSSRQVAGTAVQESKISALFWGSKKSVQPKELDVSVSLQDSILTG
GGLEKQITPKRISLSIISSISEVSSHEWDACNLDATGPDKFNPFLSHGFLSSLEESRSAVKETGWMPSHIVAKDESDNVLGVVPLYLKSHSYGEFVFDHS
WADAYYGFGSRYYPKFQCCVPFTPVTGPRILVRNTPFRDQLFDVLVSALKDLAAKSQVSSLHITFPTEKEWHMLKEKGFLQRIGMQYHWKNRNYKNFDEF
LMDMKQSKRKNIRQERKKVSTQNLSMKRLRGYEIKARHWDTFYSFYRNTTDNKWGTPYLTRDFFHTMGSKMGDQVLLVVAEEGDELVAGALNIIGGDTLF
GRLWGCHPKAYYPSLHFEACYYQAIEAAIELNLNTVEAGAQGEHKIQRGYLPVLTYSCHYLIDEAFRKAIEEFLVRESTQVKLVMKLIHDSGPLKEGIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G23390 unknown protein Potri.004G228500
[exp]
0 1
AT2G45270 GCP1 glycoprotease 1 (.1) Potri.014G067800
[exp]
2.00 0.9637
AT3G05350 Metallopeptidase M24 family pr... Potri.013G021400
[exp]
3.31 0.9693
AT3G53920 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase ... Potri.006G234400
[exp]
8.00 0.9565
AT5G04440 Protein of unknown function (D... Potri.008G030300
[exp]
10.48 0.9407
AT2G46910 Plastid-lipid associated prote... Potri.002G183700
[exp]
11.13 0.9263
AT3G07670 Rubisco methyltransferase fami... Potri.014G169300
[exp]
11.87 0.9620
AT2G27680 NAD(P)-linked oxidoreductase s... Potri.009G146000
[exp]
13.22 0.9564
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Potri.010G176400
[exp]
14.49 0.9495
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
18.11 0.9529
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.009G060500
[exp]
19.28 0.9563 CCD1.5

Potri.004G228500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.