Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10310 377 / 9e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 84 / 8e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 83 / 1e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 79 / 4e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G51680 79 / 4e-17 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 79 / 7e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 78 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 77 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 77 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 76 / 6e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056100 [exp] 88 / 3e-20 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 86 / 1e-19 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 82 / 4e-18 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 80 / 2e-17 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 79 / 5e-17 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 78 / 6e-17 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G014200 [exp] 79 / 9e-17 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.001G024300 [exp] 77 / 1e-16 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 77 / 2e-16 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026260 [exp] 396 / 2e-141 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042410 [exp] 313 / 1e-108 AT1G10310 304 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 84 / 9e-19 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 85 / 1e-18 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 83 / 1e-18 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 82 / 3e-18 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 82 / 3e-18 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 82 / 7e-18 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 81 / 9e-18 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 81 / 1e-17 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.004G228533.1 pacid=42796065 polypeptide=Potri.004G228533.1.p locus=Potri.004G228533 ID=Potri.004G228533.1.v4.1 annot-version=v4.1 ATGACGGTTCCAACAACGACGGCGCTTGGGACAGTGAGCAGAGCGGCGGCAACCGCCGCAGCAGGAGGAGGAGGAGGAGGCAGCAAGAAGGTGATGATAA CAGGAGTGGGGAAGGGTCTAGGGAGAGCATTAGCCCTAGAATTAGACAAGAGAGGTCACATTGTTATCGGCTGCTCCCGTTCCCAGGACAATCTCAATTC TCTCCAGTCTCAATTCTCCTCCGATAAGCACCTCCTCCTCGACGCCGACGTGAAATCAAATAGCAGTGTTGAAGAGCTTGCGCGTGTTGTTGTTGAGAAG AAAGGCGTTCCTGATATCATAGTGAACAATGCGGGTACAATTAACCAAAACAAGAAGATTTGGGAGGTCAGTGAAGAAGAATTTGATAGTGTTATTGATA CAAATGTGAAAGGGATAGCCAATATGTTGCGCCATTTCATCCCTCTTATGATACCAAACAAGCAAGGGATTATTGTTAACATGTCCTCTGGATGGGGAAG GTCCGGCGCTGCGCTGGTTGCACCTTATTGTGCATCTAAATGGGCTGTGGAGGGTTTAAGTAGATCAGTGGCGAAGGAGTTGCCAGAAGGAATGGCAATT GTTGCTCTTAATCCTGGTGTGATACATACTGACATGCTCACGTCATGCTTTGGCACTTCAGCTTCTCTGTACCAGGATCCTGATACATGGGCCCTAAAAG CAGCCACAATGATACTCAATCTAACAGAAGCAGATAATGGTGCATCTCTCACTGTGTGA
AA sequence Show only first row Show all	>Potri.004G228533.1 pacid=42796065 polypeptide=Potri.004G228533.1.p locus=Potri.004G228533 ID=Potri.004G228533.1.v4.1 annot-version=v4.1 MTVPTTTALGTVSRAAATAAAGGGGGGSKKVMITGVGKGLGRALALELDKRGHIVIGCSRSQDNLNSLQSQFSSDKHLLLDADVKSNSSVEELARVVVEK KGVPDIIVNNAGTINQNKKIWEVSEEEFDSVIDTNVKGIANMLRHFIPLMIPNKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKELPEGMAI VALNPGVIHTDMLTSCFGTSASLYQDPDTWALKAATMILNLTEADNGASLTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10310			NAD(P)-binding Rossmann-fold s...		Potri.004G228533 [exp]	0	1
AT1G69740		HEMB1	Aldolase superfamily protein (...		Potri.002G082300 [exp]	2.82	0.8820	Pt-ALAD.1
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Potri.001G330900 [exp]	2.82	0.8316	SOX.1
AT1G29040			unknown protein		Potri.011G064600 [exp]	15.16	0.7852
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.015G097400 [exp]	16.61	0.7353
AT1G16080			unknown protein		Potri.003G185901 [exp]	17.88	0.8376
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126600 [exp]	17.88	0.8132
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	19.44	0.7885
AT3G05170			Phosphoglycerate mutase family...		Potri.003G131200 [exp]	21.63	0.8323
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G174300 [exp]	25.59	0.7386
AT1G43245			SET domain-containing protein ...		Potri.005G193701 [exp]	32.18	0.7314

Compare expression of checked genes

Potri.004G228533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.