Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10320 462 / 7e-152 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G27650 114 / 1e-27 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT5G42820 113 / 1e-27 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G44785 57 / 4e-10 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116700 [exp] 122 / 3e-30 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 119 / 7e-30 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G188900 [exp] 120 / 9e-30 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G003000 [exp] 110 / 9e-27 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 48 / 8e-07 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.017G026600 [exp] 44 / 0.0005 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.009G137200 [exp] 43 / 0.001 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 43 / 0.001 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038139 [exp] 481 / 1e-160 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 284 / 1e-85 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10009389 [exp] 123 / 1e-30 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10008648 [exp] 119 / 2e-29 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 119 / 3e-29 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 119 / 3e-29 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 115 / 9e-29 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10005059 [exp] 46 / 0.0001 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10019359 [exp] 45 / 0.0003 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10027830 [exp] 44 / 0.0004 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.004G228600.6 pacid=42795112 polypeptide=Potri.004G228600.6.p locus=Potri.004G228600 ID=Potri.004G228600.6.v4.1 annot-version=v4.1 ATGACTTCTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGAAAACGGCGATGAGGAGGAAGGCGAAGAGGAAGGAGAAGAAGAAGT TGAAGAGAAAACAAGCGAGGAGAGAGATAGCGGAGAAGGAGAGGGAAGAAGAGGAGAGGAGACTCAACGATCCTGAGGAACAGAGGCGATTGAAGGAGAT GGAGGAAGAGGAGAAGGAGAGAATGGAAAGGGAGAGGAAAGCGTTTGAGGAGAGAGAGAGGCAGTGGATGGAAGTTATGGAGAGGAAGAGGAAAGAAGAA GAAGAAGAAGAAAGAAGGAAGGTTCTAGAAGAAAAGGAAGAGGAAGTTAATACACTACTTCAGGATGGAAAGGAGAATGGGTGTGATGAGGATGATGATT GGGAATACATAGAAGAAGGGCCTGCGGAAATTATTTGGCAAGAAAATGAGATAATTGTTAGGAAGAAAAAGGTCAGGGTTCCAAAGAAGATTGCAGATCG ACAGGGTACAAAAGAGGATGTTGATAGGCCCACATCAAATCCTCTTCCTCCACAATCTGAAGCTTTTACTGAGTATCAGAATGCGTCCGTTGTTTCAGCA CAACAGATGCTTGAGAATGTCGCTCAACAAGTACCAAATTTTGGAACTGAACAGGATAAAGCTCATTGTCCATTCCATTTAAAAACCGGAGCTTGTCGGT TTGGTCAACGCTGCAGCAGAGTTCATTTTTATCCTGATAAAGCATGCACATTGCTTATCAAGAACATGTATAATGGTCCTGGCCTTGCTTGGGAGCAAGA TGAGGGGCTTGAGTATACAGATGAGGAGGTTGAATGCTCTTATGAAGAATTTTATGAGGATGTGCATACAGAGTTCTTGAAATATGGAGAAATAGTTAAT TTTAAGGTCTGTAAAAATGGTTCATTCCACTTGCGGGGAAATGTATATGTACACTATAAGTCATTGGATTCAGCCATACTTGCTTATCATTCTATCAATG GTCGCTACTTTGCCGGCAAACAGGTAAAATGTGAATTTATCAATTTGACCAGATGGAAGGTTGCCATATGTGGAGAGTTTATGAAGTCAAGGCTGAAGAC ATGTTCTCATGGATCGGCTTGCAATTTTATTCATTGTTTCCGCAATCCTGGTGGGGACTATGAATGGGCTGATTGGGATAGACCACCACCAAGATTTTGG GTGAAAAAAATGGCCTCTTTATTTGGCTACTCTGCTGAATCTTCGTATGAGAAGCAGACAGTGGAAGAAAAGCTGAGGCAAACAAGGATGTCTAGCAATA TGTTAACAGCAGATAGAGACAGGCATGATCGAATGCGTAGATCTAGATCTAGAGACATGGATTGTGCAATCCATAGCTCTCATAAAAGTGGTGACATTGA AGATGATTTTCCAGAAGTCACTCACTGGAGAAGCCATTCAAAAGATGATGGATCTAATTCTGATGGGCGTCAGTCAGATAGAGATACAGAAAGAGACAGG GACAGGGACAGAGACAGAGACAGAGAAAGATATAGGCATCATTATCATGCAAGGAAAAGGTCAAAACACCATAGCAAAGTGTCAGAACGCTCAACTGATT ACGGGGAGAACAATAGCAGGTCCCATGAGATTGATCAAAATGAGTTGTCAGATGATGGCAGAAACAGGCATGAGCATTTTGGTTCCACCAAAAGCTCTGG AAGGAGGACATTTATAGATGATGATAAAGACAGCAAGGATGAGGCTCATCGAATGTATGGATACAGATTGGATAGGGACATAAATAGAGAAGAAAGCCGT CATCGCACTGGGAAAAGCTCAAGACACCAGAGCAGAGTAAGGTCCCCTGATGATCATGGGGATGGTGAGAGTAGAACGCTTGATAGTGGTTCCAGCAGAG AGGGGTCTCCTAGGGACAGAGACAGACACCATCATCACATAAGCAAAAGCTTAGGAAACCAGAAAAATGTCTTGGAATTCCCCGATAATCATTGGGATAA TGGACCCAGAACTTATAGTACCAATTCCAGTAATGATCTGTTAGACAGGGACAGGGTAAGGCACTTTGGTCGTGGAAGGAAACGTTCAGAGCACAGTGAA CCGGAGTTTTCAGATGATGAAGGTGCAATTGTGAAGAGGTTGAAAGACAAGTCTCTTGTTGGCAAATCTGACATAAGAAAATCTCACCTACAAAGAAAAC CAACAGGTGGTCACTCAACCAGAAGAAATTATTCAAGCAAAGAGACTGTTGATGTGAATTCTCCTGTTGAGAGTCATAAACTAGACGGAAACACTGTTTA TGGCCAAGTGAAACAATGTAGTGGAAGATGGGAATCAAACAGTCCTGGTTCAAGATACAACTTTTCTGAAGAAATTGACGAGCAGGATCGTTGGGAACCT GAAAGCTGA
AA sequence Show only first row Show all	>Potri.004G228600.6 pacid=42795112 polypeptide=Potri.004G228600.6.p locus=Potri.004G228600 ID=Potri.004G228600.6.v4.1 annot-version=v4.1 MTSKEEEEEEEEEEEEEEKTAMRRKAKRKEKKKLKRKQARREIAEKEREEEERRLNDPEEQRRLKEMEEEEKERMERERKAFEERERQWMEVMERKRKEE EEEERRKVLEEKEEEVNTLLQDGKENGCDEDDDWEYIEEGPAEIIWQENEIIVRKKKVRVPKKIADRQGTKEDVDRPTSNPLPPQSEAFTEYQNASVVSA QQMLENVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKACTLLIKNMYNGPGLAWEQDEGLEYTDEEVECSYEEFYEDVHTEFLKYGEIVN FKVCKNGSFHLRGNVYVHYKSLDSAILAYHSINGRYFAGKQVKCEFINLTRWKVAICGEFMKSRLKTCSHGSACNFIHCFRNPGGDYEWADWDRPPPRFW VKKMASLFGYSAESSYEKQTVEEKLRQTRMSSNMLTADRDRHDRMRRSRSRDMDCAIHSSHKSGDIEDDFPEVTHWRSHSKDDGSNSDGRQSDRDTERDR DRDRDRDRERYRHHYHARKRSKHHSKVSERSTDYGENNSRSHEIDQNELSDDGRNRHEHFGSTKSSGRRTFIDDDKDSKDEAHRMYGYRLDRDINREESR HRTGKSSRHQSRVRSPDDHGDGESRTLDSGSSREGSPRDRDRHHHHISKSLGNQKNVLEFPDNHWDNGPRTYSTNSSNDLLDRDRVRHFGRGRKRSEHSE PEFSDDEGAIVKRLKDKSLVGKSDIRKSHLQRKPTGGHSTRRNYSSKETVDVNSPVESHKLDGNTVYGQVKQCSGRWESNSPGSRYNFSEEIDEQDRWEP ES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	0	1
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	1.41	0.9154	CHR928,PIE1.4
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	1.73	0.9120
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	2.00	0.9144
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	3.16	0.9035
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	3.74	0.8779
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	4.00	0.9046	HAF902
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	4.24	0.8828
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	7.74	0.8588
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	8.94	0.8707
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	9.89	0.8672

Compare expression of checked genes

Potri.004G228600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.