Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59760 1581 / 0 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 867 / 0 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 426 / 4e-130 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 234 / 2e-63 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT5G61140 97 / 4e-20 U5 small nuclear ribonucleoprotein helicase (.1.2) AT1G20960 96 / 1e-19 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 89 / 2e-17 U5 small nuclear ribonucleoprotein helicase (.1) AT4G32700 86 / 8e-17 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT3G27730 77 / 5e-14 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078000 [exp] 867 / 0 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 609 / 0 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 421 / 3e-128 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 227 / 5e-61 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.015G056501 [exp] 99 / 1e-20 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.015G095500 [exp] 86 / 1e-16 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 84 / 4e-16 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.018G036600 [exp] 81 / 5e-15 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.001G348200 [exp] 58 / 4e-08 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024454 [exp] 1627 / 0 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 1618 / 0 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 871 / 0 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 493 / 5e-165 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 416 / 4e-126 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022945 [exp] 369 / 2e-116 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 236 / 5e-64 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 196 / 5e-51 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10040524 [exp] 98 / 2e-20 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10022115 [exp] 98 / 2e-20 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08148 [poplar] [flax] DSHCT DSHCT (NUC185) domain CL0023 [poplar] [flax] PF13234 [poplar] [flax] rRNA_proc-arch rRNA-processing arch domain
Representative CDS sequence Show only first row Show all	>Potri.004G228700.3 pacid=42794480 polypeptide=Potri.004G228700.3.p locus=Potri.004G228700 ID=Potri.004G228700.3.v4.1 annot-version=v4.1 ATGGCTTCAGTGAAGAGAAAATCCATTGAAAGCCAACAAGAGGACCGTCCTCTTCTTCCTCCACAGAAACAACTCAGAGAAGATCACAGCAACAACAATA GTAGCAGTTCGAAGATTATTGGGCATGGCGAAGCAGTTGCGTGTCTGCACGACGTGTCGTATCCAGAGAATTATGTCCGTCCTTCTTCATCTTCAGTTAC TCAAATTCAAAAGGACTCAAAACCCGCAAAGGAATTTCCTTTCACTCTCGACCCTTTTCAGTCTGAAGCCATCAGTTGCCTTGACAGTGGCCAATCTGTG ATGGTCTCAGCTCATACATCAGCTGGGAAAACAGTAGTAGCATTATATGCAATAGCTATGTCTTTGAAGAATCAACAAAGGGTTGTTTACACGTCACCCA TCAAAGCACTTAGCAATCAGAAGTTTAGGGAGTTCAAGGAGGAGTTTTCTGATGTTGGTCTCATGACCGGTGATGTTACCATTGACCCTAATGCTTCTTG CCTGGTGATGACTACGGAAATTTGGCGAAGTATGCAGTATAAAGGGTCGGAAACTACTAGGGAAGTAGCTTGGATTATCTTTGATGAGGTTCATTATATG CGTGATCGAGAAAGAGGTGTGGTTTGGGAAGAAAGCATTCTCATGGCTCCCAAGAATGCTAGATTTGTCTTCCTTTCTGCCACTGTTCCTAATGCCAAAG AATTTGCTGATTGGGTTGCAAAGGTCCACCAACAACCATGTCACATTGTTTATACTGATTATCGACCAACACCCCTCCAACACTATATTTTTCCCTCTGG AGGTGAGGGTTTGTACCTGGTGGTGGATGAAAAGGCAAAATTTCGAGAGGACAGCTTTCAGAAAGCGGTGAATGCATTAGTTCCTAAGGCTGAAGGTGAA AAGAAAAGGGAGAACGGGAAGTGGCAGAAAGGCTTAAATGTGAGCAGACTTGGTGAAGAAAGTGACATATTTAAAATGGTAAAAATGATCATTCGCCGCC AGTACGATCCTGTCATTCTTTTCTCATTTAGCAAAAGAGAATGTGAATTTCTTGCCATGCAGATGGCAAAAATGGACCTAAATCAGGATGATGAGAAAGC TAACATAGAAACCATCTTTTGGAGTGCCATGGACATGCTATCAGATGATGACAAGAAGCTACCTCAGGTTTCAAATATGTTACCCCTCTTAAAACGAGGT ATTGGTGTGCATCATTCTGGCTTGCTTCCCATCCTGAAGGAAGTGATTGAGATTTTGTTTCAAGAAGGGCTGATCAAGTGTTTGTTTGCTACAGAGACAT TCAGCATAGGTTTGAACATGCCTGCCAAAACTGTGGTATTTACAAATGTCCGTAAATTTGATGGGGACAAATTCAGGTGGCTATCTAGTGGAGAATATAT ACAAATGAGTGGCCGGGCTGGCCGTCGAGGAATTGATGATCGTGGGGTATGCATCCTTATGGTGGATGAGAAGCTTGAGCCTTCAACTGCTAAGATGATG CTTAAAGGAAGTGCTGATAGTTTGAACAGTGCCTTCCATCTAAGCTACAACATGCTTTTAAATCAAATGCGCTGTGAAGATGGCGATCTTGAAAATTTGC TCCGCAATTCTTTCTTTCAGTTTCAAGCAGACAGGGCCCTTCCTGATCTTGAGAAACAAGCAAAAGTCCTTGAAGAAGAGAGGAATTCAATGGTAATTGA AGAGGAAGAAAATCTGAAGAATTATTATGATCTGATACAGCAGTACAAAAGTTTGAAGAAGGATGTTCGTGATATTGTGTTTTCTCCAAAGCACTGCCTG TCCTATCTGCAGTCTGGCAGACTAGTGTGTATCCAGTGCACAGAAAGTGATGACAAGTCCCCTTCTTTCTTGATTGAAGACCTAGTCACATGGGGAGTGA TAGTCAATTTTGATCGAGTGAAAGGTGTTTCAGATGTTGATGTAGATGATGCAATTAGAAAACCAGAAAATGCAAATTACACCGTGGATGTTCTTACAAG ATGTGTTGTGACCAAAGATGGAGTTGCCAAGAAAAAAATCAAGGTTGTCCCATTGAAAGAGCCTGGAGAACCTCTCATTGTTTCTATTCCTATTGATCAG ATAAATATTTTGAGCAGTGCTCGCTTGTATATGTCAAAGGATCTTTTGCCATTAGAAGTTCGAGAGAACACCCTGAAGCAGGTTTCAGAATTTCTTTCTA GAAAACCTAGTGGGTTGCCCTTGGATCCTGAAGGAGACATGAATATTCAAAGCAGCTCATACAAAAAGGCAGTTCGTCGGATAGAGGCTTTAGAGCACCT GTTTGAAAAACATGAAATTGCAAAATCTCCACTTATCAAGGAAAAGCTCAAAGTCTTACACACGAAGCAAGAATTAACAGCCAGGATCAAGTTAATCAGG AAATCAATGCGCTCTTCCACATCATTGGCTTTTAAAGATGAACTTAAAGCTAGAAAACGAGTTCTTCGGAGGCTTGGGTATATCACAAGTGACGACGTTG TGGAGTTGAAGGGGAAAGTGGCTTGTGAAATTAGCAGTGCAGATGAGTTGACCTTGACAGAGCTCATGTTCAATGGGGTTCTCAAGGACATAAAAGTGGA GGAAATGGTCTCTCTTCTCTCATGCTTTGTGTGGCAGGAAAAACTCCAAGATGCTGCAAAACCAAGGGAAGAACTTGACTTGCTTTTTACACAATTACAA GATACCGCTCGAAGGGTTGCCAAACTTCAGCTTGAATGCAAGGTACAAATTGATGTGGAGAATTTTGTGAGTTCATTTCGGCCTGATATCATGGAGGCTG TGTATGCCTGGGCAAAAGGATCCAAGTTCTATGAGATCATGGAAATTACTAAGGTTTTTGAGGGCAGCTTGATCAGGGCAATTAGGAGACTAGAGGAAGT TCTTCAACAGCTTATAGAAGCTGCAAAGTCCATTGGTGAGACAGAGCTAGAGGCCAAATTTGAAGAGGCTGTTTCTAAAATCAAGAGAGACATTGTTTTT GCAGCATCACTATACTTGTAG
AA sequence Show only first row Show all	>Potri.004G228700.3 pacid=42794480 polypeptide=Potri.004G228700.3.p locus=Potri.004G228700 ID=Potri.004G228700.3.v4.1 annot-version=v4.1 MASVKRKSIESQQEDRPLLPPQKQLREDHSNNNSSSSKIIGHGEAVACLHDVSYPENYVRPSSSSVTQIQKDSKPAKEFPFTLDPFQSEAISCLDSGQSV MVSAHTSAGKTVVALYAIAMSLKNQQRVVYTSPIKALSNQKFREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSETTREVAWIIFDEVHYM RDRERGVVWEESILMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGEGLYLVVDEKAKFREDSFQKAVNALVPKAEGE KKRENGKWQKGLNVSRLGEESDIFKMVKMIIRRQYDPVILFSFSKRECEFLAMQMAKMDLNQDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRG IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMVDEKLEPSTAKMM LKGSADSLNSAFHLSYNMLLNQMRCEDGDLENLLRNSFFQFQADRALPDLEKQAKVLEEERNSMVIEEEENLKNYYDLIQQYKSLKKDVRDIVFSPKHCL SYLQSGRLVCIQCTESDDKSPSFLIEDLVTWGVIVNFDRVKGVSDVDVDDAIRKPENANYTVDVLTRCVVTKDGVAKKKIKVVPLKEPGEPLIVSIPIDQ INILSSARLYMSKDLLPLEVRENTLKQVSEFLSRKPSGLPLDPEGDMNIQSSSYKKAVRRIEALEHLFEKHEIAKSPLIKEKLKVLHTKQELTARIKLIR KSMRSSTSLAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAAKPREELDLLFTQLQ DTARRVAKLQLECKVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITKVFEGSLIRAIRRLEEVLQQLIEAAKSIGETELEAKFEEAVSKIKRDIVF AASLYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Potri.007G086900 [exp]	1.41	0.9077
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	2.64	0.9079
AT4G30150			unknown protein		Potri.004G167600 [exp]	4.47	0.8910
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Potri.009G168100 [exp]	4.69	0.8906
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	6.24	0.8998	Pt-RPB1.1
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	6.48	0.8853
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	6.92	0.8948
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	7.93	0.8945
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Potri.004G043200 [exp]	8.83	0.8870
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	9.79	0.8936

Compare expression of checked genes

Potri.004G228700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.