Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARF1.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59750 905 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 617 / 0 ARF ARF18 auxin response factor 18 (.1) AT4G23980 582 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 561 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G62000 541 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G35540 487 / 2e-165 ARF ARF14 auxin response factor 14 (.1) AT1G34410 473 / 1e-159 ARF ARF21 auxin response factor 21 (.1) AT1G34310 466 / 2e-157 ARF ARF12 auxin response factor 12 (.1) AT1G34390 464 / 2e-156 ARF ARF22 auxin response factor 22 (.1) AT1G35520 463 / 3e-156 ARF ARF15 auxin response factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001000 [exp] 1219 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 655 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 655 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 632 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 621 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.003G163600 [exp] 589 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 537 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 518 / 3e-174 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.014G135300 [exp] 490 / 6e-165 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007440 [exp] 1050 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 1031 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 629 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032541 [exp] 538 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 535 / 1e-180 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032413 [exp] 456 / 2e-157 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10030240 [exp] 377 / 5e-124 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10033598 [exp] 377 / 2e-120 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 377 / 3e-120 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 377 / 4e-120 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.004G228800.8 pacid=42795872 polypeptide=Potri.004G228800.8.p locus=Potri.004G228800 ID=Potri.004G228800.8.v4.1 annot-version=v4.1 ATGGCATTTGCGGCTATGAATCATACCTCCGGAGGAAATCCCCATGCAGGGGGATGCAATGATGCTCTGTACAAAGAACTATGGCATGCCTGTGCTGGAC CTCTTGTCACTCTTCCTCGTGAAGGGGAGCTAGTTTATTATTTTCCACAAGGTCACATGGAACAGCTTGAAGCTTCAATGCATCAGGGGATGGAGCCGCA AATGCCATTGTTTAATCTTCCATCTAAAATACTGTGTAAAGTAGTTAATGTTCAGCGCAGGGCTGAACCCGAAACAGATGAAGTTTATGCCCAGATAACA CTACTTCCTGAACCAGATCAAAGTGAGGTTACTAGTCCTGATCCTCCACTCCCAGAACCTGAAAGATGCACAGTCCATTCATTTTGCAAGACACTTACTG CTTCTGACACAAGCACTCATGGTGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTGCCTCCTTTGGATATGTCTCAGCAGCCACCCTGGCAGGA ATTGGTTGCAACTGATCTGCATGGCAATGAATGGCATTTTCGACACATTTTTCGAGGCCAACCAAGGCGTCACTTGCTCACGACAGGTTGGAGTGTCTTT GTTAGCTCCAAAAAGTTAGTTGCGGGTGATGCATTCATCTTCCTCAGAGGAGAAAATGGTGAGCTTCGTGTGGGAGTAAGGAGGCTGATGAGGCAACAGA CGAACATGCCATCTTCTGTTATATCTAGCCAAAGCATGCATCTAGGGGTTCTTGCTACTGCTTCTCATGCCATTGCGACTGGAACCCTTTTTTCTGTCTT CTATAAGCCAAGAACAAGTCGATCTGAGTTCATTGTAAGTCTTAACAAGTATCTTGAAGTTCGAAACCACAAGCTTTCTGTAGGGATGAGGTTTAAGATG AGATTTGAGGGCGAGGAAGTTCCTGAACGAAGGTTTAGTGGTACAATTGTCGGCGTTGGAGATAATATATCATCAGGATGGGCTGATTCTGATTGGAGGT CCTTGAAGGTCCAGTGGGATGAACCCTCATCCATCATGCGTCCAGAGAGGGTATCACACTGGGAATTGGAACCGCTTGTTGCAACTACTCCTTCAAACTC CCAACCTGTGCAAAGGAACAAGCGGGCACGACCTTATGTCATACCCTCACCAACCGCAGATCTTTCTGCACTAGGTATGTGGAAATCCCCTGTTGAGTCC TCTGCTTTATCATATGGTGATTCACAACGCGGACGAGACCTTTATTCATCACCCAATTTCTCTACCACTGCTAAGGTCAATTCTCTTGGCTTCCGAGGCA ATAGTCAAGTGGCTAGTGTTTCCCATAACTCAATGCATTGGCCTAATCGAGTGGAAAGTGTCACAGACTCTTTTGCTCCAGTTGTAAACAAAGATTCTGG GGAAAGGAGACAGGGCACTGGAATTGGCTACAAACTATTTGGGATTCAACTTGTTGAGAATTCCAACACAGAAGGAACTTCACCAGTCGTTGTGTCTGGA ACGGTGGTTAATGATCTCCCAGTTCTGTCTTTGGAAGCCGAGTCTGATCAGCATTCCGAGCCTGAGAAATCATGTTTGAGATCTTCCCAAGAGTTGCAAA GTAGGCAAATTAGGAGTTGCACAAAGGTTCACATGCAAGGGGTTGCTGTTGGAAGAGCTGTTGATTTGACACAGTTTAAACGCTACGAAGATCTGCTGAG GAAACTAGAGGAAATGTTTGATATTGAAGGTGAGCTCAGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGACATGATGAAGGTT GGGGATGATCCATGGAATGAATTCTGCGGCATGGTGAAGAAGATTTTCATCTATACATCTGAAGAAGTCAAGAGGCTGTCGCCCAAGATTAAACTTCTAG CCGAAGAAGAGGTCAAAGGAATTGGCGACAATGCTGATGCAGCTGTTAACACAGAGGACCGCTCATCCACTATTGGACCTGGATGCTGA
AA sequence Show only first row Show all	>Potri.004G228800.8 pacid=42795872 polypeptide=Potri.004G228800.8.p locus=Potri.004G228800 ID=Potri.004G228800.8.v4.1 annot-version=v4.1 MAFAAMNHTSGGNPHAGGCNDALYKELWHACAGPLVTLPREGELVYYFPQGHMEQLEASMHQGMEPQMPLFNLPSKILCKVVNVQRRAEPETDEVYAQIT LLPEPDQSEVTSPDPPLPEPERCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVF VSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEVRNHKLSVGMRFKM RFEGEEVPERRFSGTIVGVGDNISSGWADSDWRSLKVQWDEPSSIMRPERVSHWELEPLVATTPSNSQPVQRNKRARPYVIPSPTADLSALGMWKSPVES SALSYGDSQRGRDLYSSPNFSTTAKVNSLGFRGNSQVASVSHNSMHWPNRVESVTDSFAPVVNKDSGERRQGTGIGYKLFGIQLVENSNTEGTSPVVVSG TVVNDLPVLSLEAESDQHSEPEKSCLRSSQELQSRQIRSCTKVHMQGVAVGRAVDLTQFKRYEDLLRKLEEMFDIEGELSGSTKKWQVVYTDNEDDMMKV GDDPWNEFCGMVKKIFIYTSEEVKRLSPKIKLLAEEEVKGIGDNADAAVNTEDRSSTIGPGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.004G228800 [exp]	0	1	Pt-ARF1.12
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.006G090300 [exp]	1.00	0.8331
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	3.46	0.8065	Pt-ARF1.11
AT3G52990			Pyruvate kinase family protein...		Potri.010G233200 [exp]	4.24	0.7417
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	11.40	0.8068
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	24.39	0.7675
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	29.73	0.7434
AT5G50350			unknown protein		Potri.008G012000 [exp]	30.39	0.7152
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	31.08	0.7728
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	37.70	0.7595	SCD1.2
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	39.49	0.7494

Compare expression of checked genes

Potri.004G228800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.