Plant FIBer expression Database

Potri.004G228900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49880 682 / 0 mitotic checkpoint family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G000900
[exp]
980 / 0 AT5G49880 829 / 0.0 mitotic checkpoint family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024456
[exp]
506 / 4e-170 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1)
Lus10007438
[exp]
298 / 1e-97 AT5G49880 317 / 3e-105 mitotic checkpoint family protein (.1)
Lus10007439
[exp]
0 / 1 AT5G49880 199 / 1e-57 mitotic checkpoint family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05557 MAD Mitotic checkpoint protein
Representative CDS sequence
>Potri.004G228900.2 pacid=42795149 polypeptide=Potri.004G228900.2.p locus=Potri.004G228900 ID=Potri.004G228900.2.v4.1 annot-version=v4.1
ATGATACTTAGAACTCCACCAGAGAAGCGGACAAGAGGAGGAGTCGCCGACTCAAATGCAATACCTATCATCGAGAGCCCTCAATCGGACCACCACCATA
ACGTCATCAACGAAGACAACAACATTTCGCCGCTCCAACCTTCCTCCCCCGAACAACTCCTCTGCACCTACCAGTGCCGCCAATTGGTTAAATCGGATTT
TATAGACGCGTTGAGTAGTGCCGAGAAGCAAGCTCGCGATTACCAGTCTAAATTAGAGGGAATCAATGAAAATTTCACGAAGTCTGAAGACGAGAAGAAG
TTTCGAGATAAATTGTTACAGGCAGAGCAAGAACTTGCTGCTGCTAAAGGACGCGAACAAGCTCTTCAAAATCAACTTGCTAAGGAAGTTAATGATAACC
AAGAAAGGTTCAAGAAACAGTTAGAATCACAAAGTAAACTTGAGGTTAACCTTGAAAATGAGAAGAACCTTCGCCAGAAAGCTGAATCCTCAGCAGCTTC
TGCTGAAGAGAAAGCAAGTGTTTTAGAGGGAAAACTTAGCCATCTTTCTGAAAGCATAGAAAGGGAGAAAAAGCGCCCCAATACTGAGCTTGAACAGATG
AATAGAGAACCGGAGCATTCTGTTTCTAGAATAAGCGCAGAACTAGAAAAAATGGAATGCAGGGCTCAACATGCTGAGAAAGAATCAGAGCTACTGAAGG
AGCAGCTAGAAGATCTGAGAAGGCAACTTACTGAGGAGTCTGAAGTGAGAGAAGCAAGAAAGCTAAGATCTTCTCATGAAAACATCGAGTTGTTGAAGGA
AAAATTATTTGAAGAAAAAGGATGGAGAGAAAGAGCAGAATCAGAGCTATCTAAGTTACTAGAATTTGAGTTAAATATGAAGAAGCTGGAGGATGAGTTG
TCTTCTTGGAAGTCGGTGATAAAGGATATCCCTGGGGTGTTGTGCTATGACGATATACCTGCTAAGTTTGCAGCTTTACAGAAAGAGGTTATTGACAACA
TGATGAAGGTAGGTGAGGCAAATGCACTTTTGAAACAAATGGAGGTGGCCTTGGACACTGCCCAACTTGGTAAACAAAATGCTGAAACTGAGGCTGCATT
GACTAAAGAGATGGCAGAAGCTTTGAAATTGGAGGTCAAGGAGATTGAATTGATGCTCTCTATGGTTACCGAAGAGAGAGATAGGTTGAAAAATGTTGTT
AATGAATTGAAGAGGCCAAAGGACAATCGAAGAGGGGATGCAACAGCCAGTGGAGTTCTTCAGGAGCTTGAATCATCTCTTGCAAATAAGGTATTTTGTA
TTCAAGAATTGGAGAATAATTTACATGCACAAAAAGAAGTCAATAATCGCCAATTGGAAGAAATAAAGACACTCAATGACATGCTAAATAATGAAGCTAG
AAGAATTAAGTCATTGGAAAGGGAGAGTGATCGGCTTCGTGCAGAGATCTCCCTGTTGGAGTCTAAGCTAGGGCATGGTGACTTCTCTGCTGCAAATACG
AAAGTACTGAGAATGTTTAATACGCTTGCAGTTGATAGTGAGGCCAAACAATCTATTGAGGCTTTACGAACTGAGTTGAAGAAGACAAAGGAGAAGTTAC
AAGCTGTAGAAGAATTGAAGAGTCAGTCAGTTTCAGGTGATACGGGCAAGCTGGTGGACTCCTATATCTCTGGGAAGATAACACAATTAAAAGAACAAAT
TGCAACTCTTGAAAAGCGTGAAGAAAGATACAAGACAGTTTTTGCTGATAGAATCTCTGTGTTTCGGAGGGCATGTTGTGAACTTTTTGGCTACAAGATT
GTAATGGATGAACATCAGCGTTCTAATGGAATACCAGTTACTCGGTTTACCCTGCAATCTGTGTATGCTCAAAGTGATGATGAGAAACTTGAGTTTGAAT
ATGAATCAGGGAATACAAACATTTTGGTAAATGATTACACATCGCAGCCCGACATATCTCGTCAGGCTGATATATTTATTCGGAAGATGAACTCAATCCC
AGCTTTCACAGCCAACTTAACAGTGGAGTCTTTCAACAGACGAACTCTATCGTAA
AA sequence
>Potri.004G228900.2 pacid=42795149 polypeptide=Potri.004G228900.2.p locus=Potri.004G228900 ID=Potri.004G228900.2.v4.1 annot-version=v4.1
MILRTPPEKRTRGGVADSNAIPIIESPQSDHHHNVINEDNNISPLQPSSPEQLLCTYQCRQLVKSDFIDALSSAEKQARDYQSKLEGINENFTKSEDEKK
FRDKLLQAEQELAAAKGREQALQNQLAKEVNDNQERFKKQLESQSKLEVNLENEKNLRQKAESSAASAEEKASVLEGKLSHLSESIEREKKRPNTELEQM
NREPEHSVSRISAELEKMECRAQHAEKESELLKEQLEDLRRQLTEESEVREARKLRSSHENIELLKEKLFEEKGWRERAESELSKLLEFELNMKKLEDEL
SSWKSVIKDIPGVLCYDDIPAKFAALQKEVIDNMMKVGEANALLKQMEVALDTAQLGKQNAETEAALTKEMAEALKLEVKEIELMLSMVTEERDRLKNVV
NELKRPKDNRRGDATASGVLQELESSLANKVFCIQELENNLHAQKEVNNRQLEEIKTLNDMLNNEARRIKSLERESDRLRAEISLLESKLGHGDFSAANT
KVLRMFNTLAVDSEAKQSIEALRTELKKTKEKLQAVEELKSQSVSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI
VMDEHQRSNGIPVTRFTLQSVYAQSDDEKLEFEYESGNTNILVNDYTSQPDISRQADIFIRKMNSIPAFTANLTVESFNRRTLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49880 mitotic checkpoint family prot... Potri.004G228900
[exp]
0 1
AT3G25690 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLA... Potri.001G460300
[exp]
1.41 0.9547
AT3G20150 Kinesin motor family protein (... Potri.001G360200
[exp]
5.38 0.9560
AT5G60930 P-loop containing nucleoside t... Potri.005G150800
[exp]
7.74 0.9466
AT1G16070 TUB AtTLP8 tubby like protein 8 (.1.2) Potri.001G041400
[exp]
10.90 0.9433
AT3G23890 ATTOPII, TOPII topoisomerase II (.1.2) Potri.009G058900
[exp]
11.31 0.9455 TOP2.3
AT1G72250 Di-glucose binding protein wit... Potri.011G140000
[exp]
13.63 0.9444
AT5G60930 P-loop containing nucleoside t... Potri.002G106100
[exp]
14.31 0.9445
AT5G13840 FZR3 FIZZY-related 3 (.1.2) Potri.010G202100
[exp]
20.12 0.9421
AT3G27350 unknown protein Potri.001G336300
[exp]
21.33 0.9401
Potri.001G407200
[exp]
21.35 0.9428

Potri.004G228900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.