Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 806 / 0 Major facilitator superfamily protein (.1) AT1G33440 741 / 0 Major facilitator superfamily protein (.1) AT1G69850 364 / 1e-118 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT3G54140 353 / 2e-114 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G27040 348 / 8e-113 Major facilitator superfamily protein (.1.2) AT3G21670 347 / 7e-112 Major facilitator superfamily protein (.1) AT5G01180 346 / 1e-111 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 322 / 2e-102 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 321 / 7e-102 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G26690 320 / 8e-102 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000800 [exp] 1027 / 0 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 816 / 0 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G064100 [exp] 425 / 4e-142 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 397 / 2e-131 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 380 / 9e-125 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 371 / 2e-121 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.014G157500 [exp] 363 / 6e-118 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.002G225500 [exp] 352 / 1e-113 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 349 / 9e-113 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024457 [exp] 824 / 0 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10007437 [exp] 823 / 0 AT1G59740 842 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 396 / 9e-131 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 374 / 3e-122 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10013276 [exp] 369 / 1e-120 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 365 / 6e-119 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 362 / 2e-117 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10032876 [exp] 361 / 2e-117 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10036710 [exp] 359 / 1e-116 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10006477 [exp] 357 / 6e-116 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.004G229000.1 pacid=42793995 polypeptide=Potri.004G229000.1.p locus=Potri.004G229000 ID=Potri.004G229000.1.v4.1 annot-version=v4.1 ATGGACATGGAGGCAAGGAGACATGATACCAAGGGAGAGAGCGTGTGTGTGGTGAGTGAAGAGGTTACAGTTGATTGGAGAGGCAAGCCCTCCAATCCCA ACAAGCATGGTGGCATGAGAGCAGCGGCATTTGTTCTTGGGCTTCAAGCATTTGAAATAATGGCAATAGCTGCTGTCGGGAACAACCTCATAACATATGT GATAAATGAGATGCACTTCTCTTTGTCAAAGTCTGCAAACATAGTGACAAACTTTGTTGGAACTATCTTTATCCTGGCCCTCCTTGGTGGTTACCTCTCA GACTCTTATCTTGGGTGCTTCTGGACCATGCTCATCTTTGGTTTCGTGGAACTTTCTGGTTTCATATTACTATCAGTTCAAGCTCATCTTCCCCAACTAA AGCCACCCCAGTGTAACATGTTAACTGGTGGAGAAAACTGTATAGAAGCTAAAGGATTCAAGACCTTGATCTTTTTTGTAGCCCTGTACATGGTGGCATT GGGGAGTGGGTGCGTTAAACCCAACATGATTGCTCATGGGGGTGATCAGTTCAATCAAAGTAATCCAAAGCAATCCAAGAAGCTCTCTACCTACTTCAAT GCTGCCTATTTTGCTTTCTCCATGGGTGAACTTTTTGCTCTAACACTTCTAGTATGGGTTCAAACAAATTCTGGCATGGATGTTGGCTTCGGAGTCTCTG CAGCTGTCATGGCAATGGGATTGATCAGCTTGGTTTCCGGTACTCTATATTACAGGAACAAAGCCCCTCAAGGAAGCATTTTCACCCCCATAGCTCAGGT TTTTGTGGCTGCCATGTTCAAGAGAAAGCAAACCTGTCCCGCTAATCCGCAGATGCTTCATGGAAGCCAAAACAGCGTGCCGAGTAATGGCCTGGTAGAC CCATCTTCTGACCCTTGCAGGCTAGTTCATACACAAAGGTTCAGGTTCTTGGACAAGGCGTGCATCAAAGTTGAAGATGGAAGCAATAGGAAGGAGAGTC CATGGAGATTATGCAGTGTCACTCAAGTGGAGCAAGTGAAGATACTGATCTCAGCCATTCCCATTTTTGCTTGCACCATAGTTTTCAACACCATCTTAGC TCAACTCCAGACATTCTCAGTCCAACAAGGGAGTGCCATGGACACCCAACTTACCAAATCCTTCCACATCCCTCCAGCTTCACTTCAATCCATCCCTTAC ATCATACTCATCTTTGTAGTCCCTCTATATGAAACTTTCTTTGTACCTTTTGCAAGAAAAATCACTGGTCATGAATCAGGAATATCGCCTTTGCAAAGGA TAGGAGCTGGCCTCTTTTTTGTTACCTTTTCCATGGTTTCTGCTGCCATTATGGAGAAGAAGAGAAGGGATGCGGCTGTAGATTCAAACAAGATATTGTC CATCTTTTGGATCACCCCACAGTTTCTAATATTTGGATTGTCAGAAATGCTCACTGCTGTTGGTCTCATCGAGTTCTTTTACAAACAGTCTTTAAAAGGG ATGCAAGCATTCTTAACAGCTATCACATATTGCTCCTACTCGTTTGGTTTTTACTTGAGCTCCTTGCTAGTTTCTTTGGTGAACAAGGTCACCTCCTCAA GCTCTACAAATAAAGGCTGGCTTAGTGACAATGATCTCAACAAAGACAGGCTAGATCTTTTCTACTGGATGCTAGCAGTCCTTGGCTTCCTCAACTTCCT CAACTATCTATTCTGGGCTAGATGGTATTCTTACAGTCCAACATCTGTATCCATCACAACACAACAAGGTACCCATGGTGACGACTATGGCTTCACCAAC TCTTCAAAACATGTTGGGGATGAGAGCATCCCTTAG
AA sequence Show only first row Show all	>Potri.004G229000.1 pacid=42793995 polypeptide=Potri.004G229000.1.p locus=Potri.004G229000 ID=Potri.004G229000.1.v4.1 annot-version=v4.1 MDMEARRHDTKGESVCVVSEEVTVDWRGKPSNPNKHGGMRAAAFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSKSANIVTNFVGTIFILALLGGYLS DSYLGCFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMLTGGENCIEAKGFKTLIFFVALYMVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYFN AAYFAFSMGELFALTLLVWVQTNSGMDVGFGVSAAVMAMGLISLVSGTLYYRNKAPQGSIFTPIAQVFVAAMFKRKQTCPANPQMLHGSQNSVPSNGLVD PSSDPCRLVHTQRFRFLDKACIKVEDGSNRKESPWRLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGSAMDTQLTKSFHIPPASLQSIPY IILIFVVPLYETFFVPFARKITGHESGISPLQRIGAGLFFVTFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSLKG MQAFLTAITYCSYSFGFYLSSLLVSLVNKVTSSSSTNKGWLSDNDLNKDRLDLFYWMLAVLGFLNFLNYLFWARWYSYSPTSVSITTQQGTHGDDYGFTN SSKHVGDESIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59740			Major facilitator superfamily ...		Potri.004G229000 [exp]	0	1
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Potri.019G101900 [exp]	2.82	0.7792
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	3.60	0.8117
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	8.83	0.7740
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	10.39	0.7672
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	12.24	0.7730
AT5G51670			Protein of unknown function (D...		Potri.015G131800 [exp]	13.56	0.7735
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	15.42	0.7620
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	16.61	0.7418
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	17.74	0.7483
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	22.97	0.7512

Compare expression of checked genes

Potri.004G229000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.