Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71210 618 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 159 / 4e-40 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 152 / 2e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 147 / 3e-36 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 147 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 142 / 7e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 142 / 7e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 143 / 8e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 141 / 9e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 142 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000601 [exp] 282 / 1e-88 AT1G71210 147 / 4e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G000701 [exp] 219 / 7e-67 AT1G71210 134 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 162 / 1e-40 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 158 / 2e-39 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 154 / 6e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G205600 [exp] 152 / 1e-37 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 146 / 2e-36 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 143 / 4e-35 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G045000 [exp] 141 / 1e-34 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009626 [exp] 816 / 0 AT1G71210 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008998 [exp] 802 / 0 AT1G71210 645 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 151 / 2e-37 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 150 / 6e-37 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 148 / 3e-36 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 147 / 5e-36 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008650 [exp] 145 / 2e-35 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 144 / 3e-35 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 140 / 2e-34 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10038974 [exp] 136 / 1e-32 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.004G229100.3 pacid=42794668 polypeptide=Potri.004G229100.3.p locus=Potri.004G229100 ID=Potri.004G229100.3.v4.1 annot-version=v4.1 ATGCTAGCACCCAAACAAGTAGCAAAATCTTCAAGGGTTTTCCTCTCTTCCCTTTTTCTCTTCAACTTAAAGAACAACAACCCTCTTATCTCCACCACAT CCCCATCTCTGTACTGTTGCTTTTACTATGATTACTCAACAGCTGTAGCTGCTGCTGCTGCAGCAGCAGCAGCAAGAGGAGGAGGCACTCGTGATAGAGT TACAAGTGCAAAGGACATAGCCACATCCTTCAAAGAATGGTTCAAGAAAGGAAACAACGAGTTGTTGAATCGAATTTTTGTCACAATTCAGAAACATGGT GAAGACAAAGAAGCTCTTGGGCTTGCTCTTTCGCAATTGCGTCTTCCTTTGAATGAGTCATTTGTGTTGGATGTGCTTGCTTATGGTAAAAATAGAAACG AGATTTATTCTTGTGTTAAATTCTTTGATTGGGCTGGTCATAAAGGCGGTTTCTTTCATACTCGTGTTACTTTTCATGCTTTTTTTAAGATCTTGACAGA ATCAAAAGGGATGAGTGTGATGCTTGATTTCTTAGAGGTTTGTAAAGGGACAGGAGATGTTTATGTTCATCATAATATGAGATTCCAGACCGTTTTGGTT ATGGGTTATGCTGTTGCGGGCAAGCCTGATGTTGCACTCCAAATGCTTGGTAGAATGCGCTTTCAAGGTCTTGATTTGGATACTTTCTCTTATCATGTGC TTCTCAATTCTTTGATTGAAGGGTTTTTTTTTGAGGGTTTTGAGGCTATCTTTAAACAGATTTCGTTGAGGGGTTTTGAGGGTGTGGTGACCCGGGTTTT GAAGATGAAGTATTTATGTAAGCAGAAATTGTTGGATGAGGCGGAGGCGTATTTTCGTGGGCTGGTCAATGAGGGTAAGGTTGACAAGTGTAGAAGAGGT GAAATGTTTGGATATGCACATGCTTTGAGTGTTCTTGTTGATGGGTTTTGTCAAAATGGTTTGTTTGTCAAGGCCGGGGAGTTGATTGAGGAAATTAGCA AGTTGGAGTTGGTGCCAATGGAGTCTGCTTATGGGCTTTGGTTGAAGAACCTTGTCCATGCTGGAGAGATCGATGCAGCTTTCAAGTTCATGAAGAGCAA GAAGTCCTTAGAAGGGTATGTTCCAGACATTTTTTGGTGTAATTCATTGCTTTTCAGGCTTTTGAAGGATAACCGTCTTGAGGATGCTTGTGATTTGCTG ATTGAGATGAAGGAGAATCAGATATCTGCTAACACCGTCACCATGAACGCTGCATTGTGTTTCTTTTGCAAAGTTGGAATGGTAGAGGTTGCACACAAGT TGTACAAGTCGAAGTTGGAGTTTGGATTCTCGCCTAATACCATGGCGTATAATTATCTTATCAATTCTCTATGTGGAGTAGGGTCCTCTGGTGAAGCTTA TTCTCTACTGAAGAATTCTATTAAACAAGGTTATTTCCCTAGTACAAGAGCATTTTCTGTACTTGCTGATGCTTTGTGTAGACAAGGGAAGCTTGACATG GTGATGGAATTGGTTCTTCTTGCTCTATCAAAGAATTTTAGGCTCAGTGATTCCACATACGAAAGAGTCATATCAGCATTGTGCAGGGCTGGGAGGTTTG AAGATGGTTATGTGATGCATGGGGAATTTAACAGAAGGAATAGAGTTGCTACAGTAGCTACTTACAGGCAGTTGATTCATGGTTTTAGCAAGTCCAATAG GGGACATGTTGCTTCTAGGCTTCTTATTGAAATGCAGGATAAGGGTCACCAGCCAACTCGGAAAATGTTCAGAGCTGTCTTTCGCTGTCTATGTGATATG GAAAATCCAGAAATGCATTTCTTCAAATTGCTGGAGATGCAATTGTACCGTCACAAATTCAACACTAAGGTTTATAACTTCTTCATTGATGAAGCTGGGC GTAGCAAGAAACCTGAACTAGCCAGAGAAGTATTTGAGATGATGCAGAGAAATGGAATCGAGCCCAACGTTGGCTCACATGTTTTTATCTTGAAGGCTTT TCTGAGGAATGGAAGAATTTCTGATGCTCTAAATTTCCTTAAAGCAACGCATGATAGCAAGATGGATGAAAAGCTGTACCGTGCCATGGTTGTTGGGCTC TGTGAAGTCAAAAGAACCGATCTTGCTCTGGATTTTCTGAAGGCAATGCAGAGTAAGGAATTGGTTCCAAGCATGGAATGCTACGAGGCTGTTGTAAGGT TGCTTTGCTCAACCAAAAACTATGATATGGTGGTAAAAATTATTAATGACTTGAAGAAATGCCAGCGTAAGCTAACATCCCTTATTGGTAATGTACTTCT GTTGCATTCCCTGAAGAGTAATGAGCTATATGAGTCTTGGGTTCGATCAAGAGATGTGCAGAATGATACATCTTCTGATCTTTCAAACCTTGGACTCCTA ATTAGTGCATTTTCTGGTCATCTTGAAGTGAGCCTCGAATACTTGGAAGGACTGATTGAACAGTGCTTCCCCCCTGACATCTACACTTGCAACATGTTGT TGAGGATGCTATGCATGAGGGATTTGGACCGTGCTCAGAAGTACTTCAATAGACTACGTGACAAAGGATTTGAACCTAATCGATGGACTTTTGACATCAT GGCACATGGCCATTTTAAGCATGGAAGACAAGTACAGGGTAGGCTGTGGGTGGATGAGATGTCGAGGAAGGGGTTTGATCCAACTTAA
AA sequence Show only first row Show all	>Potri.004G229100.3 pacid=42794668 polypeptide=Potri.004G229100.3.p locus=Potri.004G229100 ID=Potri.004G229100.3.v4.1 annot-version=v4.1 MLAPKQVAKSSRVFLSSLFLFNLKNNNPLISTTSPSLYCCFYYDYSTAVAAAAAAAAARGGGTRDRVTSAKDIATSFKEWFKKGNNELLNRIFVTIQKHG EDKEALGLALSQLRLPLNESFVLDVLAYGKNRNEIYSCVKFFDWAGHKGGFFHTRVTFHAFFKILTESKGMSVMLDFLEVCKGTGDVYVHHNMRFQTVLV MGYAVAGKPDVALQMLGRMRFQGLDLDTFSYHVLLNSLIEGFFFEGFEAIFKQISLRGFEGVVTRVLKMKYLCKQKLLDEAEAYFRGLVNEGKVDKCRRG EMFGYAHALSVLVDGFCQNGLFVKAGELIEEISKLELVPMESAYGLWLKNLVHAGEIDAAFKFMKSKKSLEGYVPDIFWCNSLLFRLLKDNRLEDACDLL IEMKENQISANTVTMNAALCFFCKVGMVEVAHKLYKSKLEFGFSPNTMAYNYLINSLCGVGSSGEAYSLLKNSIKQGYFPSTRAFSVLADALCRQGKLDM VMELVLLALSKNFRLSDSTYERVISALCRAGRFEDGYVMHGEFNRRNRVATVATYRQLIHGFSKSNRGHVASRLLIEMQDKGHQPTRKMFRAVFRCLCDM ENPEMHFFKLLEMQLYRHKFNTKVYNFFIDEAGRSKKPELAREVFEMMQRNGIEPNVGSHVFILKAFLRNGRISDALNFLKATHDSKMDEKLYRAMVVGL CEVKRTDLALDFLKAMQSKELVPSMECYEAVVRLLCSTKNYDMVVKIINDLKKCQRKLTSLIGNVLLLHSLKSNELYESWVRSRDVQNDTSSDLSNLGLL ISAFSGHLEVSLEYLEGLIEQCFPPDIYTCNMLLRMLCMRDLDRAQKYFNRLRDKGFEPNRWTFDIMAHGHFKHGRQVQGRLWVDEMSRKGFDPT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	1.73	0.8690
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050300 [exp]	2.82	0.8618
AT2G36350			Protein kinase superfamily pro...		Potri.004G186300 [exp]	4.89	0.8221
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	8.12	0.8262
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	9.79	0.8412
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	11.31	0.8386
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	12.24	0.8336
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	14.86	0.8133
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.014G028100 [exp]	16.97	0.8153
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.015G094500 [exp]	17.49	0.7668

Compare expression of checked genes

Potri.004G229100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.