Plant FIBer expression Database

Potri.004G229200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G02570 354 / 2e-123 nucleic acid binding;RNA binding (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007436
[exp]
400 / 2e-141 AT2G02570 416 / 1e-147 nucleic acid binding;RNA binding (.1.2.3.4)
Lus10024458
[exp]
394 / 3e-139 AT2G02570 416 / 1e-147 nucleic acid binding;RNA binding (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF06003 SMN Survival motor neuron protein (SMN)
Representative CDS sequence
>Potri.004G229200.1 pacid=42793812 polypeptide=Potri.004G229200.1.p locus=Potri.004G229200 ID=Potri.004G229200.1.v4.1 annot-version=v4.1
ATGCAAGGAGAAGAAGTAAGCATAGAGGAGCTCGCTTCTAATCTCTCCACTTACAAAGAACAGCTTCACCAGGTCAGACAGCTTTTGGTTGATGATCCTG
GAAACTCTGAATATGTAGACATGGAGAAGGAGCTTATTGAGGTCATTGCTCTGACAGAAGAACTCCTTGAAACTGCAAAGCAGAATGAGATTTCTGGATC
ACATCTTGGAACAGGAGCTAGCGCATCTCCTGGTTACGCTGAACCTCAGGAGGCTGATCAACATGAGAAGTTCCCCATCGGTTCAAAAGTTCAAGCTGTA
TGGAGTGAAGATGGGGAATGGTATGATGCAACGGTTGAGGATCTTACTCCTAATGGATATTATGTAACCTTTGATGGATGGGGAAACAGGGAAGAGGTGG
ACCCTGACAATGTAAGGCCAGTTGAATTCAATGCCTTACTGGAAGCAGAAAAAGTAGCTGAAGCTACAAAACAAGCTATCAAAAGAAAGATTGCCCAAGC
GGCATCTGTTGACTTTCAATCACGAACTTTACCAGCAAAGCTTCGGATAGAACCTGACGACTCAGAGGATGTGAAAGCTGCCAAGCGTAAGAAGATACAT
TCTTTCAAGTCAAAGATGCGTTTTGAGCAACTTGAAGTCGCACAGAATAAGCGACAGAATGCATGGCAGCAGTTCCAGACAACTAAAGGCAAGACTAAGA
AGGTTGGTTTCTTCTCAGGGCGCAAGAGAGAGAGCATTTTCAAATCTCCTGATGATCCCAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGCTTGAC
AGAGTTCCAGAAGAGGGAAAAGCACTTGCATCTCAAGGATGGAAGCGTTGAGATCGATGATTAG
AA sequence
>Potri.004G229200.1 pacid=42793812 polypeptide=Potri.004G229200.1.p locus=Potri.004G229200 ID=Potri.004G229200.1.v4.1 annot-version=v4.1
MQGEEVSIEELASNLSTYKEQLHQVRQLLVDDPGNSEYVDMEKELIEVIALTEELLETAKQNEISGSHLGTGASASPGYAEPQEADQHEKFPIGSKVQAV
WSEDGEWYDATVEDLTPNGYYVTFDGWGNREEVDPDNVRPVEFNALLEAEKVAEATKQAIKRKIAQAASVDFQSRTLPAKLRIEPDDSEDVKAAKRKKIH
SFKSKMRFEQLEVAQNKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKDGSVEIDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G02570 nucleic acid binding;RNA bindi... Potri.004G229200
[exp]
0 1
AT3G53690 RING/U-box superfamily protein... Potri.019G093600
[exp]
6.40 0.8056
AT1G20823 RING/U-box superfamily protein... Potri.007G064401
[exp]
7.74 0.7549
AT1G51550 Kelch repeat-containing F-box ... Potri.008G006300
[exp]
12.16 0.7870
Potri.004G170350
[exp]
23.57 0.7833
AT1G11480 eukaryotic translation initiat... Potri.011G031900
[exp]
27.23 0.6677
AT4G23270 CRK19 cysteine-rich RLK (RECEPTOR-li... Potri.011G035850
[exp]
27.82 0.7530
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
28.24 0.6987
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
28.82 0.7845
AT5G16610 unknown protein Potri.017G130400
[exp]
31.73 0.7049
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.001G242333
[exp]
32.37 0.6582

Potri.004G229200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.