Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAND1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02560 1913 / 0 TIP120, HVE, ETA2, ATCAND1, CAND1 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) AT1G64790 45 / 0.0006 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000500 [exp] 2174 / 0 AT2G02560 1940 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026261 [exp] 2033 / 0 AT2G02560 1968 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) Lus10042409 [exp] 2009 / 0 AT2G02560 1949 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08623 [poplar] [flax] TIP120 TATA-binding protein interacting (TIP20) CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.004G229300.4 pacid=42795886 polypeptide=Potri.004G229300.4.p locus=Potri.004G229300 ID=Potri.004G229300.4.v4.1 annot-version=v4.1 ATGGCGAATTTACAAATGACGGGTATTCTGGAAAAGATGACGGGTAAGGATAAAGATTACAGATACATGGCAACATCTGATTTGTTGAATGAGTTAAACA AGGAGGGATTTAAAGCTGATACTGATTTGGAGATAAAGTTGTCAAATATTGTTCTACAGCAACTTGATGATGTAGCTGGTGATGTTTCTGGATTGGCTGT GAAGTGTCTTGCTCCATTGGTGAAGAAGGTCAGTGAGGCTCGAGTTGTGGAGATGACTAATAAACTATGTGAGAAATTGCTACATGGTAAAGATCAGCAT CGTGACATCGCAAGCATTGCTTTGAAGACTATTGCATCTGAAGTCACAGCAATATCTCTGGCTCAGTCTATTCTTGTCACCCTATCTCCACAGTTGATAA AAGGAATAACAAGTCCGGGAATGAGCACGGAGATCAAATGTGAATGTCTTGATATTTTGTGTGATGTTCTTCATAAATTTGGAAATTTGATGGCAAATGA TCATGAGTTGCTTTTAAATGCACTTTTGTCCCAATTGAATTCCAATCAAGCCACCGTTAGAAAGAGGACAGTTTCGTGCATTGCATCTCTTGCTTCAAGC TTGTCAGATGATTTATTGGGGAAGGCGACAGTTGAGGTTGTTCGGAAATTGAGAACTAAGGGTACAAAACCTGAGATGATCCGAACAAACATTCAAATGA TTGGTGCTTTGAGCCGTGCTGTGGGATATCGATTTGGACCCCATCTCGGAGACACGGTGCCAGTGCTAATTAATTACTGCACAAGTGCATCAGAGAATGA TGAGGAGCTTCGTGAATATGGCTTGCAGGCACTGGAAAGTTTTCTGCTCAGATGTCCCAGAGACATTTATTCTTACTGTGATGAAATTCTTCATCTTGCT CTGGAGTACCTAAGTTATGATCCAAACTTTACTGATAACATGGAAGAAGATACTGATGACGAGAGTCATGAGGAGGAGGAGGATGATGAGAGTGAAAATG AATATACCGATGATGAAGATGTCAGCTGGAAAGTTCGAAGGGCAGCCGCTAAATGCTTAGCAGCATTAATTGTTTCTCGTCCGGAAGTTCTTGCAAAACT GTATGAGGAGGCCTGTCCTAAATTGATTGATAGATTTAAAGAAAGGGAAGAAAATGTCAAGATGGATGTCTTCAATACATTCATTGAGCTACTACGTCAA ACTGGAAACGTTACAAAAGGGAAGATTGACATGAATGAATCAAGCCCAAGATGGTTACTGAAGCAAGAAGTGCCAAAGATTGTCAAATCTATAAATAGGC AACTGCGTGAGAAATCCATCAAGACTAAGGTTGGGGCATTTTCAGTGTTGAGAGAACTTGTGGTTGTCTTGCCAGATTGCCTTTCAGAACAGATTGGGTC ACTTATTCCAGGAATCGAGAAGGCATTAAATGACAAATCTTCGACCTCAAATTTGAAGATTGAGGCTCTTACTTTTACAAGATTGGTTCTGGCTTCACAT TCACCTCCTGTTTTCCACCCTTATATCAAGGCCCTTTCTAGTCCTGTTTTATCTGCTGTTGGTGAGAGATACTACAAGGTCACAGCAGAGGCCTTAAGAG TATGTGGGGAGCTTGTTCGTGTTGTCCGTCCCAATATCCAGGGCTTTGGTTTTGACTTCAAACCTTATGTTCGTCCAATATATAATGCCATAATGTCACG CTTGACAAACCAAGATCAAGACCAGGAGGTTAAGGAGTGTGCAATATCTTGCATGGGGCTTGTCATTTCAACATTTGGCGATAATCTCAAAACAGAATTA CCTGTGTGCCTCCCTGTACTTGTTGATCGTATGGGGAATGAGATAACACGACTTACTGCTGTGAAGGCTTTTGCTGTAATTGCGACTTCTCCTCTTCGGA TTGATCTGTCATGTGTCCTGGAGAATGTCATTGCAGAGCTGACTGCATTCCTACGGAAGGCTAATCGAGCTTTAAGGCAGGCAACTTTGGGGACACTGAA TTATCTAATTGTAGCATATGGTGACCAAATTGGTTCATCTGCTTATGAAGTTATTATCGTGGAACTTTCTACTCTGATAAGTGATTCAGATTTGCACATG GCAGCTCTTGCTCTGGAACTTTGCTGCACCTTAATGACTGACAGGAAATCAAGCCCGAATGTTGGTTTGGCTGTTAGAAATAAAGTTCTTCCTCAGGCAC TAACATTAATTAAAAGCCCATTGCTACAGGGTCAAGCCCTGTTGGCTTTACGAAACTTTTTTGCTGCTTTAGTCTATTCTGCAAATACAAGTTTCGACAC TTTACTGGACTCGCTCCTTTCAAGTGCCAAGCCAGCTCCACAGTCAGGAGGTGTTGCAAAAAAGGCTTTGCATTCAATAGCCCAATGTGTGGCTGTTCTC TGCCTTGCTGCAGGCGATCTAAAATGTTCATCTACTGTGGACATGCTTACTGAGATTCTTAAAGATGACAGCAGCACCAATTCAGCTAAGCAGCACCTTG CACTGTTATGCCTGGGAGAAATTGGGAGAAGGAAAGATCTGAGCTTGCATGCAAATATAGAAACCATTATTATCGAGTCATTCCAATCCCCTTTCGAAGA GATAAAGTCTGCTGCTTCTTATGCTCTTGGCAATATTGCTGTCAGTAATCTTTCCAAGTACCTACCATTTATCTTGGACCAGATTGATAATCAACAGAAG AAACAGTATCTCCTGCTTCATTCTCTGAAGGAGGTTATAGTAAGACAGTCGGTAGATAAAGCAGAGTTCCAGGATTCCATTGTTGAGAAGATACTTAAAT TACTATTTAATCACTGTGAAAGTGACGAAGAGGGCGTCCGGAATGTTGTAGCTGAGTGCCTCGGTAAAATTGCACTCGTTGAACCTGCAAAGCTTGTTCC TGCGCTTAAGGTGAGAACAACGAGTCCAGCTGCCTTCACCAGAGCAACAGTAGTAATTGCTGTAAAATACTCAATAGTTGAGCGACCTGAGAAGATTGAT GAGATTATATACCCTGAAATCTCATCTTTTCTTATGCTTATCAAGGATCATGACCGGCATGTCAGGCGTGCAGCTATCTTGGCCTTGAGCACATTTGCTC ACAACAAACCTAACCTTATTAAGGGACTCCTTCCTGAATTATTGCCACTTCTCTATGATCAAACAATTGTTAAGCAAGAATTGATACGAACCGTAGATCT TGGGCCTTTCAAGCATATTGTGGATGATGGCCTTGAGTTGAGGAAAGCAGCTTTTGAATGCGTAGACACATTGCTGGACAGTTGTCTTGATCAAGTGAAC CCTTCATCTTTCATTGTTCCTTACCTCAAATCAGGCTTGGATGATCATTATGATGTTAAAATGCCTTGCCATCTTATCCTCTCAAAACTGGCAGATAAGT GTCCATCTGCTGTATTGGCAGTGTTGGACTCATTGGTGGACCCCCTCCAAAAAACTATCAATTTTAAGCCTAAGCAAGTTGCTGTAAAGCAAGAAGTGGA TCGTAATGAAGACATGATTCGCAGTGCTCTTCGAGCAATTGCATCCTTGAATCGTATAAGCGGAGGAGATTGCAGCCTTAAATTCAAAAACCTTATGAGT GAAATTTCAAAATCTCCAACCCTCTGGGACAAGTATTATTCCATCCGAAATGAATGA
AA sequence Show only first row Show all	>Potri.004G229300.4 pacid=42795886 polypeptide=Potri.004G229300.4.p locus=Potri.004G229300 ID=Potri.004G229300.4.v4.1 annot-version=v4.1 MANLQMTGILEKMTGKDKDYRYMATSDLLNELNKEGFKADTDLEIKLSNIVLQQLDDVAGDVSGLAVKCLAPLVKKVSEARVVEMTNKLCEKLLHGKDQH RDIASIALKTIASEVTAISLAQSILVTLSPQLIKGITSPGMSTEIKCECLDILCDVLHKFGNLMANDHELLLNALLSQLNSNQATVRKRTVSCIASLASS LSDDLLGKATVEVVRKLRTKGTKPEMIRTNIQMIGALSRAVGYRFGPHLGDTVPVLINYCTSASENDEELREYGLQALESFLLRCPRDIYSYCDEILHLA LEYLSYDPNFTDNMEEDTDDESHEEEEDDESENEYTDDEDVSWKVRRAAAKCLAALIVSRPEVLAKLYEEACPKLIDRFKEREENVKMDVFNTFIELLRQ TGNVTKGKIDMNESSPRWLLKQEVPKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLSEQIGSLIPGIEKALNDKSSTSNLKIEALTFTRLVLASH SPPVFHPYIKALSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNIQGFGFDFKPYVRPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLKTEL PVCLPVLVDRMGNEITRLTAVKAFAVIATSPLRIDLSCVLENVIAELTAFLRKANRALRQATLGTLNYLIVAYGDQIGSSAYEVIIVELSTLISDSDLHM AALALELCCTLMTDRKSSPNVGLAVRNKVLPQALTLIKSPLLQGQALLALRNFFAALVYSANTSFDTLLDSLLSSAKPAPQSGGVAKKALHSIAQCVAVL CLAAGDLKCSSTVDMLTEILKDDSSTNSAKQHLALLCLGEIGRRKDLSLHANIETIIIESFQSPFEEIKSAASYALGNIAVSNLSKYLPFILDQIDNQQK KQYLLLHSLKEVIVRQSVDKAEFQDSIVEKILKLLFNHCESDEEGVRNVVAECLGKIALVEPAKLVPALKVRTTSPAAFTRATVVIAVKYSIVERPEKID EIIYPEISSFLMLIKDHDRHVRRAAILALSTFAHNKPNLIKGLLPELLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLELRKAAFECVDTLLDSCLDQVN PSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQVAVKQEVDRNEDMIRSALRAIASLNRISGGDCSLKFKNLMS EISKSPTLWDKYYSIRNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	0	1	CAND1.3
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	1.41	0.7101
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	1.41	0.7372
AT5G05010			clathrin adaptor complexes med...		Potri.001G293150 [exp]	9.59	0.5828
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	15.62	0.6644
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004600 [exp]	17.32	0.5695	GTC904
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	23.47	0.5906
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	23.49	0.6373	NTN2.2
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	24.06	0.6663
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	27.27	0.6340
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	27.29	0.6642

Compare expression of checked genes

Potri.004G229300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.