Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49820 675 / 0 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT3G45890 152 / 1e-39 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT2G31190 146 / 9e-39 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT1G13770 122 / 4e-30 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G23470 116 / 1e-27 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) AT5G01510 108 / 3e-25 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193300 [exp] 160 / 7e-43 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 143 / 2e-37 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 126 / 5e-31 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 112 / 1e-26 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 94 / 2e-21 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 96 / 5e-21 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038136 [exp] 740 / 0 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 740 / 0 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 164 / 9e-44 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 163 / 1e-43 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 136 / 4e-35 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 132 / 5e-33 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 130 / 2e-32 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10033888 [exp] 125 / 4e-31 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10036909 [exp] 123 / 2e-30 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 89 / 1e-18 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.004G229500.2 pacid=42793829 polypeptide=Potri.004G229500.2.p locus=Potri.004G229500 ID=Potri.004G229500.2.v4.1 annot-version=v4.1 ATGCCTCCGATCAAAATGAAGCAATCGCCGAACCACACGGCGCAAAGCCTAACCACGTCTACCACTTCCTCACAAGAAGCGCGTCGTCTTGTCCGTGAAA CGCTGCGTATAAGCGCTAACTTGGCTTCTTCTCCCTCTCCTTCTCCTCCTGCCAATCCACCCACACTCTCTCAATCGGCTCTTCTAGAAGACGAATTTCT CGGTTCCACCTTGAGATTGATTTGTTGTGAGGAAATTGATGGCCGGAGATGGAAGTATGTCGCTGAGAGAGACGCCTCTGGACGGTTCAAGAAGAATTCT ATTCGCGCCGTTGGATTGCAGACTCCGCAAGCTCCCGTTGAGGAATTGATGGGATTCATTAGATCCTATGTAGTCCCTGAAGGTTTTCCTGATAGTGTTA TTCCATCCTATGTGCCATACATGACTTGGAGAGCTTTGAAGCATTTCTTTGGCGGAGCGATGGGAGTTTTCACAACGAAAACCCTTTTGAATTCAGTTGG AGTCTCTAAGAGCCAAGCTATTCCTGGGGCTGTCGCTATCAATTGGATTCTCAAGGATGGTGCTGGTCGTGTTGGAAAAATGCTTTATGCACGACAAGGA AAGAAATTTGATTATGATCTAAAACAGTTGCGATTTGCGGGGGACCTTCTCATGGAATTGGGTGCTGCGGTGGAGTTGGCAACTGCAGCAGTCCCACACC TTTTTCTTCCTTTGGCTTGTGCTGCTAATGTGGCAAAGAATGTTGCTGCTGTAACATCAACATCCACTCGTACACCAATTTACAAAGCCTTTGCCAAAGG AGAAAACATAGGGGATGTCACTGCCAAGGGAGAATGTGTTGGCAACGTGGCTGATTTGCTGGGAACTGGGCTGAGCATAATGATCTCAAAAAGAAATCCA TCCCTGGTTACCACATTTGCATTACTTTCATGTGGGTACGTCCTCAGCTCTTACCAGGAGGTTAAATCTGTAGTTTTGCACACCTTGAACGGGGCCAGAT TCAGTGTGGCTGTGGAGTCTTTTCTTAAGACAGGGCAAGTTCCCTCATTGCACGAGGGGAATGTGAAGGAAAATATATTCAATTTTCCGTGGTTGAAAGA TAGGTCTATCTCTCTAGGACCAAGGTTTAAAGATGCGTTTCAAGATCCAAGAGCATATCTTGCCATCGAGCCTCTCTTCGAGAGAGAGAGATATATAGTG ACTTATAACCCATCAAAGGATAAAGTGTATGCATTGCTCAAGGATCAAGCAAAGCCGGATGACATAGTAAAAGCAGCATTCCACGCCCATGTGCTTATGC ATTTCATACATTCATCAAACAACAATTGCTCTTCACCCAGCAAGCAGCAGGAATATGGTCATTCAAACTTTATCCTCTCAGCTGCTGATCTTGAGTCTCA TATTGCTGAGTCGTGCAAGATGGTCTCAACCTTGTATGCTCCTTTCAAAAGTAAAGCTGCAGAACAAGGTTGGAGAATGTCAGAATCGCATCTTAATCCC GGCAGAGCTAGGCTCGTGTTAAATAGCTAA
AA sequence Show only first row Show all	>Potri.004G229500.2 pacid=42793829 polypeptide=Potri.004G229500.2.p locus=Potri.004G229500 ID=Potri.004G229500.2.v4.1 annot-version=v4.1 MPPIKMKQSPNHTAQSLTTSTTSSQEARRLVRETLRISANLASSPSPSPPANPPTLSQSALLEDEFLGSTLRLICCEEIDGRRWKYVAERDASGRFKKNS IRAVGLQTPQAPVEELMGFIRSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTKTLLNSVGVSKSQAIPGAVAINWILKDGAGRVGKMLYARQG KKFDYDLKQLRFAGDLLMELGAAVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKGECVGNVADLLGTGLSIMISKRNP SLVTTFALLSCGYVLSSYQEVKSVVLHTLNGARFSVAVESFLKTGQVPSLHEGNVKENIFNFPWLKDRSISLGPRFKDAFQDPRAYLAIEPLFERERYIV TYNPSKDKVYALLKDQAKPDDIVKAAFHAHVLMHFIHSSNNNCSSPSKQQEYGHSNFILSAADLESHIAESCKMVSTLYAPFKSKAAEQGWRMSESHLNP GRARLVLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Potri.004G229500 [exp]	0	1
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	14.42	0.7684
AT1G05790			lipase class 3 family protein ...		Potri.002G231567 [exp]	23.36	0.7544
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	30.74	0.7265
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	42.40	0.7127
					Potri.008G176201 [exp]	43.08	0.7428
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	102.87	0.7138
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124100 [exp]	179.59	0.7011
AT4G19950			unknown protein		Potri.007G105600 [exp]	235.37	0.6853	Pt-ORF.7
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	242.33	0.6665
AT3G08950		HCC1	homologue of the copper chaper...		Potri.016G118700 [exp]	274.00	0.6704

Compare expression of checked genes

Potri.004G229500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.