Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24270 860 / 0 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT5G09880 62 / 2e-09 Splicing factor, CC1-like (.1) AT2G16940 61 / 3e-09 Splicing factor, CC1-like (.1.2.3) AT3G10400 58 / 5e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G01080 54 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G08000 50 / 6e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 51 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 51 / 1e-06 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT4G39260 48 / 1e-06 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G55340 51 / 2e-06 PHIP1 phragmoplastin interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009800 [exp] 69 / 8e-12 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.005G148100 [exp] 67 / 2e-11 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 65 / 2e-10 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 62 / 2e-09 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.010G227500 [exp] 58 / 6e-09 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.012G145050 [exp] 56 / 1e-08 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G209701 [exp] 58 / 2e-08 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.006G127200 [exp] 54 / 2e-07 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 51 / 2e-07 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005168 [exp] 940 / 0 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Lus10038132 [exp] 111 / 7e-26 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1) Lus10000826 [exp] 66 / 7e-11 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10002093 [exp] 65 / 2e-10 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10016122 [exp] 58 / 4e-09 AT4G24270 45 / 1e-05 EMBRYO DEFECTIVE 140 (.1.2) Lus10003287 [exp] 60 / 6e-09 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10030327 [exp] 59 / 1e-08 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10037960 [exp] 57 / 2e-08 AT3G10400 240 / 2e-79 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10038693 [exp] 57 / 2e-08 AT3G10400 244 / 6e-81 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10003684 [exp] 58 / 3e-08 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF05391 [poplar] [flax] Lsm_interact Lsm interaction motif
Representative CDS sequence Show only first row Show all	>Potri.004G229732.2 pacid=42796631 polypeptide=Potri.004G229732.2.p locus=Potri.004G229732 ID=Potri.004G229732.2.v4.1 annot-version=v4.1 ATGGAGATCGACAGCGAAGATAAAACCCTAGAAGAAGAACTAGACGACGAAGACAATAATAACAACGACAACGGAGACCAACTTCAGAACCCCAAACTCC GGTCAGACTCTGATTCCGATTCCGACTCAGAAGACGAATCGCAGCAAAATCAAGAGCTTAAAACCCTAGAAACTGAGCTCTCCAGTAACCCCGCCAATTA TGACTCTCATGCTCAATACATAAAACTGTTGAGAAAAATGGGAGAGATAGATAAGCTTAAACAAGCAAGAGAAGCCATGAACACTGTGTTTCCACTAAGC CCTGACATGTGGCGTGATTGGGCTAAAGATGAAGCTTCTATTTCTGGGCCAGAGGGTTTCGCGGGGGTTGAGAAGATTTATGACCGTGGAGTGTTTGATT ATCTGTCTGTTTCTCTTTGGTGTGACTATTTGAATTTCATACAAGTACATGATCCTTCAGTGCGAGAATGTTCTCCTGATGGCATTTCAAAGGCCCGAAA TCTCTTTGAGCGTGCTCTTACTGCTGCTGGTTTGCATGTTGCTGAAGGAAACAAAATTTGGGAATTGTACAGGGAATTTGAACAGGCGGTACTGCACACC ATTGATGAGAATGACATTAAGGCAAAGGAAGTACAGGTCCAACGCATTCGAAATATTTTCCACCGCCAATTGTCTGTTCCACTTGTTAACTTGAGGTCAA CACTCCTTGCGTACAAGGCTTGGGAGGTGGAACAAGGGATTGTTCTTGATGCCCAATCTAGTGAAGTTGATGGTATATCTTCTCATCTTGCCTCAGCATA CCAAAAGGCCATGGAAGCTTATAATGCTCGTGCTCAGCATGAAGAACAGATTTCTATGCAGAATATATCTGATACAGAAAAAATTCAAAATTTCATGAAC TACTTAAAATTTGAAAAGTCTGTGGGCGATCCAGCACGGGTTCAAGTTTTATATGAGCGTGCAATGGCTGACTTTCCTATATCAATTGATCTATGGCTTG ATTATACTCGCTATCTGGACAGGACCTTGAAGGTAGGAAATGTTCTGAGGGATGTTTATTCCAGGGCAACAAAAAATTGTCCCTGGATAGGAGAGCTTTG GGTTCAGTATATGCTTTCCTTGGAACGTGGCCGTGCTCCTGAAAAGGAGATATCTTCTGTTTTTGAAAAGTCCCTGCAATGCACTTTTTCAACAATTGAA GAGTACTTGGATTTGTTTCTAACACGAGTACATGGTTTGAGGAGGAGGATCGAATGTGGTGGTGAAGTGAATGGTGTCTTGGATTATTCATTAATACGGG AAACTTTTCAGCATGCCTCAGATTACCTGTCACCACACCTGAAGAACACAGATGGTTTGCTGCGTCTGTATGCCTACTGGGCTCGTCTAGAGATGAATTT GGGAAAAGATTTAGTTGCAGCTCGCCGAGTTTGGGAGAGCTTGCTTAAGATCAGTGGCTCAACGTTGGAAGCTTGGCAGGGTTTTATAGCAATGGAAACT GAATCGGGTCACATAAGTGAAGCTAGGTCCATATACAAGCGATGCTTTAGCAAAAGATTTCCTGGAACAGGTTCAGAGGACATTTGCCATTCTTGGTTGC GATTTGAAGAGGAGTTTGGTACACTAGAAGCTTTTGACCATGCTATACAGAAGGTTACTCCTCGTCTAGAAGAGCTGAAGTTGTATAGGATACAACAGGA AACAAAAGCATCAACAGATCAGAGTGAGGTATCTGGGAAGAAAATTGCTCGTGAAAAGAGAAAGGGTGGTTCAACAGCTACTGACAAAGAGTCTCCAGCA AAGCGGCAAAAACAAACAGCCCAAACTCAAAAGAAGGGGTATGAGGATAAAGATCAGTTGCAGAAATATGAAGTAAATGAGGCCCAGGAGGCCAAAATTG ATCTTGAAAAGACAGACAGTGCCCCTGATGAAAAACAAATGAAAGGTTCTGACGTTGTAAGAACAAAAGGCTATACAGACCAGTGCACATTGTTTATCTC TAATATCCATTTCAAGGCAAATTCTGAAGATATACGGAAATTCTTCAGTGATGTTGGAGGGGTGGCCTCTATTAGAATTTTGCATGATAGAAATACTGGA AAATCAAGGGGACTGGCTTATGTGGATTTTGTGGATGACGAACACCTTGCTGCAGCTATAACAAAGAACAAACAGCTGTTATTTGGGAAGAGGCTGAGCA TTGCCCGGTCAGATCCCAAACAGAACCGAAGAGATGGTCGTAGAGTTCCCAGGGAACAAGCTTTTGCTAGTGACCGAAGAAGGCACAATTGGGAATCTGC ATCCAAAGAGTATGTCGATACACACAATGCATCAGGATCACAGGAGGCTCCTCAGACTGCTACTCTCAAGTCAGATGACAACATCCAGTTCAAGGGGAAG AACATATTCGCAGTGCCAAGAAATGTTAGGACACTTGGGTTGTCTGCAAACAAGTCGAAAACAGTGGAAGAAGGAGATGAGAAACCAAAGTCGAATGATG AGTTCAGAAAAATGTTCATTAAAGAATGA
AA sequence Show only first row Show all	>Potri.004G229732.2 pacid=42796631 polypeptide=Potri.004G229732.2.p locus=Potri.004G229732 ID=Potri.004G229732.2.v4.1 annot-version=v4.1 MEIDSEDKTLEEELDDEDNNNNDNGDQLQNPKLRSDSDSDSDSEDESQQNQELKTLETELSSNPANYDSHAQYIKLLRKMGEIDKLKQAREAMNTVFPLS PDMWRDWAKDEASISGPEGFAGVEKIYDRGVFDYLSVSLWCDYLNFIQVHDPSVRECSPDGISKARNLFERALTAAGLHVAEGNKIWELYREFEQAVLHT IDENDIKAKEVQVQRIRNIFHRQLSVPLVNLRSTLLAYKAWEVEQGIVLDAQSSEVDGISSHLASAYQKAMEAYNARAQHEEQISMQNISDTEKIQNFMN YLKFEKSVGDPARVQVLYERAMADFPISIDLWLDYTRYLDRTLKVGNVLRDVYSRATKNCPWIGELWVQYMLSLERGRAPEKEISSVFEKSLQCTFSTIE EYLDLFLTRVHGLRRRIECGGEVNGVLDYSLIRETFQHASDYLSPHLKNTDGLLRLYAYWARLEMNLGKDLVAARRVWESLLKISGSTLEAWQGFIAMET ESGHISEARSIYKRCFSKRFPGTGSEDICHSWLRFEEEFGTLEAFDHAIQKVTPRLEELKLYRIQQETKASTDQSEVSGKKIAREKRKGGSTATDKESPA KRQKQTAQTQKKGYEDKDQLQKYEVNEAQEAKIDLEKTDSAPDEKQMKGSDVVRTKGYTDQCTLFISNIHFKANSEDIRKFFSDVGGVASIRILHDRNTG KSRGLAYVDFVDDEHLAAAITKNKQLLFGKRLSIARSDPKQNRRDGRRVPREQAFASDRRRHNWESASKEYVDTHNASGSQEAPQTATLKSDDNIQFKGK NIFAVPRNVRTLGLSANKSKTVEEGDEKPKSNDEFRKMFIKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Potri.004G229732 [exp]	0	1
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	8.36	0.8121
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.006G262200 [exp]	12.72	0.8050	PKL.2
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	13.26	0.7914
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	15.23	0.8031
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	16.55	0.8084	TTN8.2
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	16.58	0.8020
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	21.77	0.7953
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	24.18	0.7475
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	28.14	0.7904
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	28.86	0.7934

Compare expression of checked genes

Potri.004G229732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.