Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MMT.1,MMT
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49810 1553 / 0 MMT methionine S-methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026263 [exp] 1684 / 0 AT5G49810 1551 / 0.0 methionine S-methyltransferase (.1) Lus10042407 [exp] 1680 / 0 AT5G49810 1554 / 0.0 methionine S-methyltransferase (.1) Lus10038132 [exp] 189 / 2e-52 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II CL0063 [poplar] [flax] NADP_Rossmann PF12847 [poplar] [flax] Methyltransf_18 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G229800.2 pacid=42796382 polypeptide=Potri.004G229800.2.p locus=Potri.004G229800 ID=Potri.004G229800.2.v4.1 annot-version=v4.1 ATGGCAGGCAGTGCATTATCGGTCGAGGAGTTCTTGAAAGAGTGCCAGAAGTCAGGGGATGCAGCGTACGGTGCGTTTCGTTCGGTTTTGGAGAGACTGG AGGATCCGAATTCCCGAACTGCAGCTCGGATCTTCCTCTCAGATCTCTATAAACGCGTCGGCGACTCCGATCAGTGCCTTGAACAGTACCATTTCCGGAT CCAAGATATCTTCTTGGATCAATACCAAGGTATGGGCTACCGAGGGAGAAAGAAATTGACCATGATGGTGATCCCAAGCATTTTTATGCCAGAAAACTGG TCCTTCACTTTTTACGAAGGCCTAAATAGACATCCAGATTCTATTTTTAAAGACAAGACGGTTGCTGAGCTTGGTTGCGGAAATGGATGGATATCCATTG CTCTTGCCGAGAAATGGTTGCCATCAAAGGTGTATGGCCTTGATATCAATCCTAGAGCAGTAAAGGTTTCCTGGATAAACTTATACTTAAATGCTTTTGA TGAGAAAGGTCAAGTCATCTATGATGCAGAGAAGAAAACTTTACTGGACAGGGTGGAGTTTTACGAGTCTGATTTATTGTCTTATATTAGAGATCACAAC ATTGAACTTGAAAGAATTGTTGGATGCATACCTCAGATACTTAATCCAAATCCAGATGCGATGTCTAAAATGATCACAGAAAATGCAAGCGAGGAGTTTC TGCATTCATTGAGTAACTACTGTGCACTTCAGGGGTTTGTTGAGGATCAGTTTGGCTTAGGTCTCATTGCTAGGGCTGTTGAGGAAGGAATAGCTGTCAT CAAACCTATGGGGATTATGATCTTTAATATGGGCGGTCGTCCAGGACAAGCTGTTTGTAAACACTTGTTTGAACGTCGTGGTTTTCATGTCAACAAGCTT TGGCAGACTAAAATTATTCAGGCTGCTGATACAGATATTTCAGCCTTGGTTGAAATTGAGAAAAACAGCCCACACCGCTTTGAGTTTTTCATGGGTCTCA CTGGAGATCAACCCATCTGTGCTCGTACAGCATGGGCTTATGGGCAAGCTGGTGGTCGAATTGCACATGCTTTATCCGTTTACAGTTGTCAGCTTCGCCA ACCAAACCAGGTGAAGAAAATATTTGAATTTCTTAAGAATGGCTTCCACGATGTCAGCAGTTCTTTGGATTTATTTTTTGAAGATGACTCAGTTGCTGAT GAGAAAATTCCATTCCTAGCTTCTCTTGCTGATCAATTGAAGGAGAATTCATGTTTCCCATATGAGCCGCCAGCTGGAAGCATACATTTCCGTAATCTCA TAGCAAGCTTTCTGAAAACATATCACCATATTCCACTCAATTCAGATAATGTTGTTGTCTTTCCTTCAAGGGCTGTGGCAATTGAGAACGTTCTTCACTT GTTCTCACCTCGTCTTGCAATCGTTGATGAACATCTAACTCAACACTTACCCCGAAAATGGTTAACATCTCTAGCCATCGAGAGTGCAGAAAGTGATGAC CCGTCAAAGGATGTGATTACAGTCATTGAAGCACCTAGACAGTCTGATTTAATGGTAGAGCTGATAAAGAAGCTGAAGCCACAAGTGGTGATTACTGGAA TGGCTCATTATGAGGCTGTCACTAGTTCAGCCTTTGCGCACCTTTTAGAGGTTACCAGAGAAATTGGATCTCGTCTTTTCTTAGACATATCTGATCATTT TGAGTTATCCAGCCTTCCAAGTTCCAATGGGGTCCTAAAATATCTTGCTGGAACTTCTCTTCCCTCACACGCTGCAATCGTTTGTGGCCTTGTAAAAAAC CAGGTCTATGCAGATTTAGAAGTAGCTTTTGTTATTTCAGAAGAAGAGGCCATCCTCAAGGCTTTGTCCAAAACTGTGGAAGTTCTAGAAGGAAATACCA CACCAATTAGGGAACATTATTATGGTTGTCTTTTTCATGAGCTCCTAGCTTTTCAGCTTGCAAACCGACATCCACTAGTTGAGAGGGAGTCCGAGAAGGC CAAATCAGATAAGTTGATTGGGTTTTCTAGTTCAGCTATCTCAGTCCTTGATTATTCTGAGTTGTCAATTAGTGGGGCAGAAATATCTACCTTGATTCAC ATGGATGTTGATCAAAGCTTCTTGCCCACTCGATCTCCTGTAAAGGCTGCAATCTTTGAAGGTTTTGCAAGACAGAACTTGGCTGAATCGGAAATTGATG TCACCCCTGGCATGAAGCAATTTATTAAAAGCAATTACGGGTTTCCAACAGATAGCAGCACAGAATTTGTGTACGCAGACAGCACACAAGCTCTGTTTAA TAGGCTGATCCTTTGCTGCATTAATGAAGGTGGAACATTGTGCTTCCCAGCTGGATCAAATGGAAACTATGTTTCTGCTGCAAAATTTTTAAAAGCAAAC ATTATGATTATCCCTACTGACCCTGGAGCGGGCTTTAAGCTGACAGGCAGCCTACTCAATGGAGTACTTCAGACTGTTAATAAGCCATGGGTTTACATTT CTGGTCCCACAATCAACCCTACAGGCTTGCTTTACAGCAGCAAAGAGATGGAGACCATATTAACTACGTGTTCAAAATTTGGGGCGAGAGTTGTCATTGA TACTTCAGTCTCTGGATTGGAATTTGATACTGAAGGTTGGGGTGGGTGGGATTTGGAGCCTACATTGTCAAAGCTGAATTCCTCTCACAACCAATCTTTT TGCGTGTCTTTACTGGGAGGATTGTCTCTGAAGATCCTTAGTGGAGCACTGAAATTTGGGTTTCTGGCTTTGAATAATCCTCTGCTGGTTGATACACTTC ATAGCTTTCCAGGATTAAGCAAACCTCATAGCACTGTTCGATATGCCATAAAGAAGTTGCTGGGTTTGAATGAGCAGAAATCAGAACTAACTGATGCTGT TGCAGAACAATCAAGAAATTTGCAATCGAGGTGCCAGCGCCTAAAGGAGACACTAGAGAAATGTGGGTGGGATGTGCTCGAGCCTCAAGGTGGTATTTCC ATGGTGGCCAAGCCCACTGCCTATCTCAACAAGGTTATCAAGATCAGGGACTCGCCCAAAGAAGACGGGAAAGCTACAAGTACCTACGAAGTGAAGCTCG ATGACTCGGTCTTCAGGGAAGCCATGGTCAAATCCACAGGTTTATGTATCAACAGTGGCTTATGGACTGGAATTCCAGGCTACTGCCGCTTCACACTAGC CTTGGAAGAAAGCGACTTCGAGCGAGCATTGGATTGCATCAACAAATTTCAGGATGTCATCAACAACTGA
AA sequence Show only first row Show all	>Potri.004G229800.2 pacid=42796382 polypeptide=Potri.004G229800.2.p locus=Potri.004G229800 ID=Potri.004G229800.2.v4.1 annot-version=v4.1 MAGSALSVEEFLKECQKSGDAAYGAFRSVLERLEDPNSRTAARIFLSDLYKRVGDSDQCLEQYHFRIQDIFLDQYQGMGYRGRKKLTMMVIPSIFMPENW SFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIALAEKWLPSKVYGLDINPRAVKVSWINLYLNAFDEKGQVIYDAEKKTLLDRVEFYESDLLSYIRDHN IELERIVGCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGIAVIKPMGIMIFNMGGRPGQAVCKHLFERRGFHVNKL WQTKIIQAADTDISALVEIEKNSPHRFEFFMGLTGDQPICARTAWAYGQAGGRIAHALSVYSCQLRQPNQVKKIFEFLKNGFHDVSSSLDLFFEDDSVAD EKIPFLASLADQLKENSCFPYEPPAGSIHFRNLIASFLKTYHHIPLNSDNVVVFPSRAVAIENVLHLFSPRLAIVDEHLTQHLPRKWLTSLAIESAESDD PSKDVITVIEAPRQSDLMVELIKKLKPQVVITGMAHYEAVTSSAFAHLLEVTREIGSRLFLDISDHFELSSLPSSNGVLKYLAGTSLPSHAAIVCGLVKN QVYADLEVAFVISEEEAILKALSKTVEVLEGNTTPIREHYYGCLFHELLAFQLANRHPLVERESEKAKSDKLIGFSSSAISVLDYSELSISGAEISTLIH MDVDQSFLPTRSPVKAAIFEGFARQNLAESEIDVTPGMKQFIKSNYGFPTDSSTEFVYADSTQALFNRLILCCINEGGTLCFPAGSNGNYVSAAKFLKAN IMIIPTDPGAGFKLTGSLLNGVLQTVNKPWVYISGPTINPTGLLYSSKEMETILTTCSKFGARVVIDTSVSGLEFDTEGWGGWDLEPTLSKLNSSHNQSF CVSLLGGLSLKILSGALKFGFLALNNPLLVDTLHSFPGLSKPHSTVRYAIKKLLGLNEQKSELTDAVAEQSRNLQSRCQRLKETLEKCGWDVLEPQGGIS MVAKPTAYLNKVIKIRDSPKEDGKATSTYEVKLDDSVFREAMVKSTGLCINSGLWTGIPGYCRFTLALEESDFERALDCINKFQDVINN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	0	1	Pt-MMT.1,MMT
AT5G53750			CBS domain-containing protein ...		Potri.011G050500 [exp]	4.89	0.6047
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	6.24	0.6280
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.008G086300 [exp]	10.19	0.6172
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	17.86	0.5513
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Potri.013G148500 [exp]	19.49	0.5349
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Potri.011G145300 [exp]	21.49	0.5906
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	22.18	0.5945
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	23.55	0.6043	RAB1.6
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	24.31	0.6057	Pt-ACLA.1
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	36.37	0.5207

Compare expression of checked genes

Potri.004G229800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.