Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02500 382 / 8e-134 MCT, ATMEPCT, ISPD 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026271 [exp] 414 / 4e-146 AT2G02500 373 / 7e-130 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10042400 [exp] 414 / 1e-141 AT2G02410 377 / 4e-127 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF12804 [poplar] [flax] NTP_transf_3 MobA-like NTP transferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G230200.1 pacid=42794623 polypeptide=Potri.004G230200.1.p locus=Potri.004G230200 ID=Potri.004G230200.1.v4.1 annot-version=v4.1 ATGAGTCCCCATCTTCTTCTTTCTCAGATGAACCTCACTACTCTCTCTTTTCCTTACAAATCTCTTAAAAATCTATCCTTTATATCCACTAGCAATCACT CACTTCCTTCCCCGTCTCTTCACTTCAACTCCAATCTCCTCCTTCAATCTCCAGGACATAAATTCAAGCTGACCCAGAAGCCCAAAATCCTCCCTTTTAC TACCAAGAGCTCTGCTCAAGTTGATGATATATCTGGAGTTGTTAAAGAGAAGAGTGTTTCTGTTATTCTGTTGGCTGGAGGGCAGGGAAAAAGAATGGGT GCAAACATGCCGAAGCAGTATCTACCACTTCTTGGCCAACCTATTGCTTTGTATAGTTTGTACACTTTCTCAGAAATGGATGAAGTGAAAGAAATTATTG TAGTTTGTGATCCATCCTACAAGGACATTTTTGAAGATTCTCAAGAACAGATCAATGTAGACCTTAAATTTGCACTGCCAGGAAAGGAGAGACAAGATTC TGTATACAGTGGGCTTCAGGAAGTTGATTTGAATTCCGAGCTTGTCTGCATCCATGACTCGGCAAGGCCTCTGGTATTGTCAGAAGATGTGGAAAAGGTC CTTAAAGATGGTTGGATAAATGGAGCTGCTGTACTTGGTGTTCCTGTTAAAGCTACAATCAAGGAGGCAGATGGTGAATCTTTCGTAGTGAGAACTCTTG ACCGCAAAACACTTTGGGAAATGCAGACCCCCCAGGTGATGAAACCCGAGTTGCTTAAGAAAGGCTTTGAGCTGGTGAATAGAGAGGGTCTTGAAGTCAC CGATGATGTATCTATTGTTGAGCACCTTAAGCATCCAGTATACATCACTGAAGGATCATACACAAACATCAAGGTCACAACCCCTGATGATTTGTTGCTT GCAGAGAGAATTTTAAGCACGAGCTCTTGA
AA sequence Show only first row Show all	>Potri.004G230200.1 pacid=42794623 polypeptide=Potri.004G230200.1.p locus=Potri.004G230200 ID=Potri.004G230200.1.v4.1 annot-version=v4.1 MSPHLLLSQMNLTTLSFPYKSLKNLSFISTSNHSLPSPSLHFNSNLLLQSPGHKFKLTQKPKILPFTTKSSAQVDDISGVVKEKSVSVILLAGGQGKRMG ANMPKQYLPLLGQPIALYSLYTFSEMDEVKEIIVVCDPSYKDIFEDSQEQINVDLKFALPGKERQDSVYSGLQEVDLNSELVCIHDSARPLVLSEDVEKV LKDGWINGAAVLGVPVKATIKEADGESFVVRTLDRKTLWEMQTPQVMKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLL AERILSTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Potri.004G230200 [exp]	0	1
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.012G144300 [exp]	7.61	0.9525	Pt-HCF106.2
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	13.56	0.9475
AT1G12250			Pentapeptide repeat-containing...		Potri.003G112900 [exp]	16.97	0.9469
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	20.78	0.9375
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039300 [exp]	24.08	0.9162
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104900 [exp]	25.29	0.9300
AT4G34412			unknown protein		Potri.004G141400 [exp]	26.98	0.9080
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.002G151100 [exp]	27.00	0.8874
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	27.12	0.9403	PtrTrxm3
AT5G45170			Haloacid dehalogenase-like hyd...		Potri.015G112500 [exp]	32.51	0.9364

Compare expression of checked genes

Potri.004G230200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.