Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39960 787 / 0 GTP binding;GTP binding (.1) AT3G12080 188 / 2e-51 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G78010 59 / 5e-09 tRNA modification GTPase, putative (.1) AT5G11480 42 / 0.0008 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054200 [exp] 182 / 5e-49 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.002G092600 [exp] 57 / 2e-08 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.005G209900 [exp] 42 / 0.0007 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014634 [exp] 681 / 0 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10033794 [exp] 265 / 4e-85 AT5G39960 258 / 5e-83 GTP binding;GTP binding (.1) Lus10027371 [exp] 198 / 8e-55 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 196 / 1e-52 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10006309 [exp] 55 / 1e-07 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10029578 [exp] 54 / 2e-07 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10006927 [exp] 42 / 0.0009 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF14714 [poplar] [flax] KH_dom-like KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G230600.1 pacid=42796665 polypeptide=Potri.004G230600.1.p locus=Potri.004G230600 ID=Potri.004G230600.1.v4.1 annot-version=v4.1 ATGTCTCATTCATGGGTTCGGGCTCTTTCATCACGAAAGAGGCATTATGGTGTAGGAATCCTACATAGAAGCATTAGCAGCAGCAGCGGCTCCTGCTGCT CACATTTTTCCAAAGTGAACAATGAGAATAACCCCCTATTTACAGTTTCATTCAGATCATTGTTTAATAATGCCAACATTATAAATGGAAATACTTTAAT ACCTCCTGATTTAAAGTGTTGTCCGTTAGCCCCAAGATGGCACCTTTATCGGGGGTATGTCTCCGTGGTTCAACAGAAGATGCCAGAGTTGGTTTCTGGT TCAGGTGAAGATGTAACAAGCAGTGATTTGGAGCAGCTTGATTTTTGTTCTGACGATGGTGGTACTGACAAGAAAGTCAAGGTTGTGTATGAAAAACCAA TTGACTTTACCAAAATTGACACGAACCTGCTTCCAACTGTCATTATTGTTGGACGTCCAAATGTGGGGAAATCGGCTTTATACAACCGGCTGATTCGGAG GAGGGAAGCTCTTGTGTATAACACGCCAGATGATCATGTTACTCGAGATATAAGAGAAGGCATTGCCAAATTGGGTGATTTGCGGTTTAAAGTGTTGGAC TCAGCTGGCTTAGAAACAGAAGCAGCTTCAGGGTCTATTCTTCAGAGAACAACTAGCATGACTGCAAATGTGCTCGCAAGAACTCAATTTGCAGTATTCT TGATAGATGTGAGAGCTGGATTGCATCCATTGGATTTGGATGTTGGGAAGTGGTTTCGCAAACATGCACCTGGAATCAAGCCTATAGTAGCAATGAATAA ATCTGAATCACTTTGTGATGGTGTTGGCTCTATTTCTGATGCTGCTGATGAAGCCCGAATGCTAGGATTTGGGGATCCGATTGCAATATCTGCTGAGACG GGGCTGGGTATGGCAGCTCTCCACGATGCTCTTCAGCCTTTGATTGAGGATTACATGCTCCAAGTTTTAAACAATAATTGTGACCAAGACAATGGGTATG GCCCCAGTCATGTTGATGATGTTGCTGGTGAAGTTGATGAGTCCAAGTTACCATTACAGTTAGCAATCATAGGAAGACCAAATGTTGGAAAGTCAACCTT GTTGAATACTTTGTTACAAGAAGAACGTGTGCTGGTGGGTCCAGAGGTTGGTCTGACGAGAGATTCTGTCAGAACCCAGTTCCAATATGAGGGAAGAACT ATATATCTGGTTGACACTGCAGGTTGGTTGCAAAGAACAGGTCTAGAAAAAGGACCATCATCACTGAGTGTGATGCAATCAAGAAAGAATTTGATGAGGG CTCAAGTGGTTGCTTTGGTACTTGATGCTGAAGAGGTTGTGAAAGCTAGACGTAGTATGACACATGCTGAAGTAGTTATAGCAAGAAGGGCAGTGGAAGA GGGCCGTGGCTTGGTTGTTATTGTGAACAAGATGGATCTTCTGAAAGGGAAACGAAATTCAACATTATTTGACAAGGTCATGGAAGCTGTTCCTTTAGAA ATTCAGACGGTTATACCTCAGATCACAGGAATACCAGTTGTATTCACTTCAGCATTAGAGGGCAGGGGCCGGATTGCCGTCATGCGTCAGGTCATTGATA CATATGAAAAATGGTGCTCAAGGTTGTCCACATCCCGGCTTAACCGTTGGCTGCGCAAGGTTATGAGCAGGCATTCTTGGAAAGACCAGGCAGCGCAACC CAAGATCAAGTATTTCACCCAAGTGAAGGCCCGTCCACCCACTTTTGTCGCCTTCACAAGCGGGAAGACGCAGCTTTCAGAAACAGACCTCAGGTTCTTA ACGAAGTCCTTAAAGGAAGATTTCGACTTGGGTGGGATCCCAATCCGAATCATGCAACGGTCTGTTCCTAGAAAAGGTGGTGGTAACAGAAGCAAAAGCA CCCCTTCTGCAGGCAGGATGGCTGAAAGGTTCTTGTCTGACAAGAGAACTGCTGATGTTTAA
AA sequence Show only first row Show all	>Potri.004G230600.1 pacid=42796665 polypeptide=Potri.004G230600.1.p locus=Potri.004G230600 ID=Potri.004G230600.1.v4.1 annot-version=v4.1 MSHSWVRALSSRKRHYGVGILHRSISSSSGSCCSHFSKVNNENNPLFTVSFRSLFNNANIINGNTLIPPDLKCCPLAPRWHLYRGYVSVVQQKMPELVSG SGEDVTSSDLEQLDFCSDDGGTDKKVKVVYEKPIDFTKIDTNLLPTVIIVGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFKVLD SAGLETEAASGSILQRTTSMTANVLARTQFAVFLIDVRAGLHPLDLDVGKWFRKHAPGIKPIVAMNKSESLCDGVGSISDAADEARMLGFGDPIAISAET GLGMAALHDALQPLIEDYMLQVLNNNCDQDNGYGPSHVDDVAGEVDESKLPLQLAIIGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSVRTQFQYEGRT IYLVDTAGWLQRTGLEKGPSSLSVMQSRKNLMRAQVVALVLDAEEVVKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLKGKRNSTLFDKVMEAVPLE IQTVIPQITGIPVVFTSALEGRGRIAVMRQVIDTYEKWCSRLSTSRLNRWLRKVMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFTSGKTQLSETDLRFL TKSLKEDFDLGGIPIRIMQRSVPRKGGGNRSKSTPSAGRMAERFLSDKRTADV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39960			GTP binding;GTP binding (.1)		Potri.004G230600 [exp]	0	1
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	1.41	0.9138
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Potri.017G051500 [exp]	8.36	0.8677
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	10.58	0.8563	Pt-HDA6.2,HDA909
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	10.58	0.8900
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.017G153700 [exp]	10.90	0.7965
AT1G64600			methyltransferases;copper ion ...		Potri.001G086800 [exp]	11.66	0.8560
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	13.00	0.8631
AT1G01290		CNX3	cofactor of nitrate reductase ...		Potri.014G099500 [exp]	16.06	0.7681
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	16.15	0.8842
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	16.97	0.8821

Compare expression of checked genes

Potri.004G230600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.