Plant FIBer expression Database

Potri.004G231000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49800 374 / 8e-133 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026274
[exp]
318 / 8e-110 AT5G49800 304 / 2e-104 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Lus10042398
[exp]
294 / 2e-100 AT5G49800 298 / 9e-102 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0209 Bet_v_1_like PF01852 START START domain
Representative CDS sequence
>Potri.004G231000.1 pacid=42794380 polypeptide=Potri.004G231000.1.p locus=Potri.004G231000 ID=Potri.004G231000.1.v4.1 annot-version=v4.1
ATGAACAGTACCGGTCCAACACCTTGCAGCCGATCTTGGTCCATTAGCGAGGACTCGCTGAGAAGGTACGTACACTTTGCTAGCGAAAGCTGCATACAAG
AGTTGCTGTCTGCCTCCGATTCGAATAGGTTTGGCAATGTTGGTAATGATGGATGGAAGATTCTAACTGATCTAGACAATGGGGTAGAGATATCAAAACG
TAGGTCTGGATCATTCCACACCTTTCGCAGCCGTTGGCTGCTCAGATCAGTCTCCCCTCAACAATTCATCACTGTTGCCAATGCCATTGATGCTGCTAAG
CAATGGGAGCAGGACCTGGTGGAAGCTAGATACATAAAGGACCTTGAAGATAATCTCAGCATAATCCGTCTGAGGTTCGGAGAGAACTCTAAACCTTTGT
TTAGAAACAGAGAGTTTATAGTATATGAGCGACGGGAAACAATGGAAGATGGAACCCTGGTGGTGGCAGTAGCTTCATTGCCAAAAGAGATAGCAGCAGG
ATTGCATCCAAAGCAAAATAATGCTATCAGAGGACTTTTGCTGCAGTCAGGGTGGGTGGTGGAGAAGCTTGAGGATGATTCCTGTATGGTCACCTATGTC
GTCCAGTTAGATCCTGCTGGATGGCTGCCCAAGTGCTTTGTGAACAGGCTCAACACGAAGCTGGTTATGATCATTGAAAACCTCAAGAAATTAGCACAAG
GTTGTCCAGCTGATGGCGACAAATGA
AA sequence
>Potri.004G231000.1 pacid=42794380 polypeptide=Potri.004G231000.1.p locus=Potri.004G231000 ID=Potri.004G231000.1.v4.1 annot-version=v4.1
MNSTGPTPCSRSWSISEDSLRRYVHFASESCIQELLSASDSNRFGNVGNDGWKILTDLDNGVEISKRRSGSFHTFRSRWLLRSVSPQQFITVANAIDAAK
QWEQDLVEARYIKDLEDNLSIIRLRFGENSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNAIRGLLLQSGWVVEKLEDDSCMVTYV
VQLDPAGWLPKCFVNRLNTKLVMIIENLKKLAQGCPADGDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49800 Polyketide cyclase/dehydrase a... Potri.004G231000
[exp]
0 1
AT1G78260 RNA-binding (RRM/RBD/RNP motif... Potri.002G098100
[exp]
4.00 0.8544
AT3G09780 CCR1, ATCRR1 CRINKLY4 related 1 (.1) Potri.016G089200
[exp]
4.24 0.8486
AT3G03620 MATE efflux family protein (.1... Potri.015G139400
[exp]
5.00 0.8348
AT1G12240 ATBETAFRUCT4, V... VACUOLAR INVERTASE, Glycosyl h... Potri.003G112600
[exp]
7.28 0.7749 INVA.2
AT1G09010 glycoside hydrolase family 2 p... Potri.013G021200
[exp]
7.48 0.7945
Potri.005G106151
[exp]
7.74 0.8181
AT2G03090 ATHEXPALPHA1.3,... EXPANSIN 15, expansin A15 (.1) Potri.013G060800
[exp]
12.00 0.8360 Pt-EXP2.5,PtrEXPA11
AT1G70940 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxi... Potri.008G129400
[exp]
12.72 0.8046 PIN3.2,PIN6
Potri.001G021300
[exp]
14.66 0.8600
Potri.010G001250
[exp]
15.29 0.8313

Potri.004G231000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.