Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 800 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 742 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 727 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 605 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 405 / 3e-126 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 311 / 8e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 283 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) AT3G24550 252 / 2e-72 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G37450 254 / 2e-71 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 244 / 7e-71 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232301 [exp] 1644 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 1498 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 1461 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 1452 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 1051 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1028 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 947 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 849 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 823 / 0 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 941 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 847 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 401 / 3e-124 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 380 / 5e-122 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 388 / 1e-119 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 382 / 4e-117 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 359 / 5e-109 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 337 / 9e-105 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 323 / 2e-101 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 306 / 9e-90 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G231500.5 pacid=42794690 polypeptide=Potri.004G231500.5.p locus=Potri.004G231500 ID=Potri.004G231500.5.v4.1 annot-version=v4.1 ATGTGTCCTAAAGTTCTCACGTTTTTGCTGGTTGCTTCCTTTCAGATTTATACAGAGACCTATGGTGATGATTTTACAGTAATGAGTATTCTCAAGGATG CCTGGGAAAACACACCACGTAATTGGGTGGGTGGAGATCCCTGTGGAGGCAAATGGGAAGGCATTTCATGTTACAATTCACGTGTGACTTCAATAACGTT GGCAGCTGTGGGATTGACGGGTGAGCTGTCTGGAGACATCTCCTACTTGTCAGAATTGGAGGTTCTGGATCTATCGTACAACACGGGGTTGAACGGTACC CTTCCACCATCAATTGTGAATTTGAAGAAGCTAAAAAACTTAAAGTTGGCTGGTTGTAGTTTCTATGGCCCTATCCCTGAGTTGATAGGGTCTCTTCAGC TGCTGGAGTCTCTAGACCTGAATTCTAATAGATTCACTGGATCAATTCCACATTCAATTGGAAACCTTTCGAAACTCATTGTGCTGGATCTATTCAATAA TCTGCTTGATGGAGCCATCCTTGTCTCCAGTGGAACTACATCTGGTCTTGATATGCTAGTTAATGCAAAACACTTTCATCTAGGAAGGAATCGGTTCTCA GGCACAATCCCGAAAGAGCTTTTCAGATCAGACATGACTCTCATTCATGTGCTTTTGCATGACAATAATCTCACGGGAAGCATTCCTTCTACCCTTGGAC TGGTGCACACTTTGGAGGCTGTACGTTTTGAAGGGAATTCGTTAACTGGACCTGTCCCTTCAAACCTCAACAATCTTACCAATGTGACGACGTTGATGTT GTCCAACAATAAATTTACTGGGCCTGTTCCTAATCTCACTGGCATGGCTTATCTCAGCTACTTGGACCTGAGCAATAATAGTTTTGACGCTTCAGATTTT CCGTTGTCATTCTCAAACTTACGGGCTTTGACAACACTAATGATGGAAAACACTGGACTTGAAGGTCGGATTCCTCCTACCCTCTTCGATCTTCCTAGTT TACAGACTTTGATTCTAAGGAACAACCAGCTCAGTGGCACATTGGATATTGCAACAAGCTCTAGCAGCCAACTGAAAGTCATTGATATGCGAAACAATCT CATTTCTTCATTCTATTCAGAAACACCAGAACGAAGGAATAACGTGGATGTAATACTTGTGGGTAACCCAGTTTGTGAGCATCCAGAAGCAACAGAAAAT TACTGCACAGTTCCTCAAGCCAATTCTTCGTATACGAGGCTACCAGAGAAATGTGTTCCCCTCCACTGCATTTCAGACCAGATTTCCAGTCCCAATTGCA AATGCTCGTATCCATACAGGGGAGTACTAGTCTACAAACCTCCATTTTTAGAGTCAAGAAACTTAACTTATTATGTACATCTGGAAGAAGAGTCTCTGAT GCGTTCCTTCAAGTTCCATCAACTTCCTGTGGATTCAGTTGAAGTAAATTTTCCAGCGAAGGATTCGTTTGGGTATCTTGAGTCAAATTTATCTATGTTT CCGTCGGGCCAAAATCATTTTAACACAGCTACGATTTCTGAAATTGGATTTGTGCTAACCCTTCAGACTTATGAGAATTCAGATATCTTTGGACCTACAT ATTTTAAGGGTTCTGCATATCCATACTTCGATGGAAAACCCACGGTCTCAAAAGAGTTATCAAGCACTGGAAGGATCATTGGGGCTGCGGCTGGAGGAGC CTCTTTCCTGCTACTATTGCTTCTTGCAGGGGTATGTGCTTATCGTCAGAAGAAGAGGAGAGAAAGAGCAAGTGAACAGAAGAATCATTTTGCATACTTG GATTCAAGGAACAGTAACAGCGTTCCTCAGTTGAAGGGAGCCAGATGCTTCTCTTTCAATGAGATTATGAAGTGTACGAATAATTTCTCGGAAGCCAATC ATATTGGATCAGGGGGTTACGGAATGGTTTATAGAGGGATGCTTCCTACTGGACAACTGATTGCCATCAAACGATGTCGACAAGGATCGGTGCAAGGTGG GCTTGAATTCAACTCAGAGATAGAAGTTTTATCGAGAGTTCATCATAAAAATGTTGTAAACCTTGTTGGGTTTTGCTTTGAGAGAGGTGAACAGATGCTA ATTTATGAGTTTGTTCGCAATGGTAGTCTCAGGGACAGCCTATCAGGTTTGAGCGGGATCTGGCTGGATTGGAGGAGGAGACTTAAAGTGGCTCTTGGTG CAGCAAGAGGTCTTGCCTACTTGCACGAGCTTGTCAACCCTCGTATTATCCACAGGGACGTAAAATCAGCTAACATATTACTGGATGAATCCTTAAATGC TAAAGTTGCTGACTTTGGTCTTTCCAAGCCCATGGACAATAGTGAGCTTATTCTTGCTACCACTCAAGTTAAAGGGACAAGGGGCTATATAGATCCAGAA TATCAGGAGACCCTGCTCTTGACTGAGAAGAGTGATGTCTATGGCTTTGGAGTTGTGTTGCTGGAACTAGTAAGTGGAAGAAAGCCTTTAGAGCGAGGGA AATACCTTGTAGCGGAGGTAAGTAGCTCATTGGATAGAAAAAAAGATCTATATAGCCTTCATGAACTTCTTGACCCAAGCATTGGTTTAGACACGAAGCC GAAAGGTCTAGATAAGATAGTGGATCTGGCAATGAAATGTGTACAAGAGAAAGGAAGTGACAGGCCAACAATGGGTGAAGTGGTGAAAGAGATTGAGAAT ATCTTGCATCTTGCTGGTTTAAACCCCAATACTGAATCAGAATCCACTTCAGCTAGTTTTGAGGAAGCAAGCCAGGACGAGTTTCCACCATCCTTGAAGG AAGAAGAGCTTTCATTATCTTGA
AA sequence Show only first row Show all	>Potri.004G231500.5 pacid=42794690 polypeptide=Potri.004G231500.5.p locus=Potri.004G231500 ID=Potri.004G231500.5.v4.1 annot-version=v4.1 MCPKVLTFLLVASFQIYTETYGDDFTVMSILKDAWENTPRNWVGGDPCGGKWEGISCYNSRVTSITLAAVGLTGELSGDISYLSELEVLDLSYNTGLNGT LPPSIVNLKKLKNLKLAGCSFYGPIPELIGSLQLLESLDLNSNRFTGSIPHSIGNLSKLIVLDLFNNLLDGAILVSSGTTSGLDMLVNAKHFHLGRNRFS GTIPKELFRSDMTLIHVLLHDNNLTGSIPSTLGLVHTLEAVRFEGNSLTGPVPSNLNNLTNVTTLMLSNNKFTGPVPNLTGMAYLSYLDLSNNSFDASDF PLSFSNLRALTTLMMENTGLEGRIPPTLFDLPSLQTLILRNNQLSGTLDIATSSSSQLKVIDMRNNLISSFYSETPERRNNVDVILVGNPVCEHPEATEN YCTVPQANSSYTRLPEKCVPLHCISDQISSPNCKCSYPYRGVLVYKPPFLESRNLTYYVHLEEESLMRSFKFHQLPVDSVEVNFPAKDSFGYLESNLSMF PSGQNHFNTATISEIGFVLTLQTYENSDIFGPTYFKGSAYPYFDGKPTVSKELSSTGRIIGAAAGGASFLLLLLLAGVCAYRQKKRRERASEQKNHFAYL DSRNSNSVPQLKGARCFSFNEIMKCTNNFSEANHIGSGGYGMVYRGMLPTGQLIAIKRCRQGSVQGGLEFNSEIEVLSRVHHKNVVNLVGFCFERGEQML IYEFVRNGSLRDSLSGLSGIWLDWRRRLKVALGAARGLAYLHELVNPRIIHRDVKSANILLDESLNAKVADFGLSKPMDNSELILATTQVKGTRGYIDPE YQETLLLTEKSDVYGFGVVLLELVSGRKPLERGKYLVAEVSSSLDRKKDLYSLHELLDPSIGLDTKPKGLDKIVDLAMKCVQEKGSDRPTMGEVVKEIEN ILHLAGLNPNTESESTSASFEEASQDEFPPSLKEEELSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	0	1
					Potri.010G007976 [exp]	2.82	0.9105
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	2.82	0.9133	XTH2.2
AT5G07900			Mitochondrial transcription te...		Potri.010G022700 [exp]	3.46	0.9031
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.005G037801 [exp]	5.47	0.8528
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231600 [exp]	5.65	0.8863
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	6.92	0.9059
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	8.06	0.8795
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	9.53	0.8890
AT1G79620			Leucine-rich repeat protein ki...		Potri.004G231551 [exp]	10.00	0.8673
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	10.00	0.8968

Compare expression of checked genes

Potri.004G231500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.